RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 IQCF6A8MYZ5 107 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 PYYP10082 97 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 GCSHP23434 173 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 MPV17P39210 176 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 KLRD1Q13241 179 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 RFESDQ8TAC1 157 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 ITLN1Q8WWA0 313 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 RAB9BQ9NP90 201 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 TET2Q6N021 2002 aaPredicted RBP8.69□□□□□ -1.02
USP3-206ENST00000558157 A0A096LNJ9 63 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 GRNP28799 593 aaKnown RBP8.69□□□□□ -1.02
USP3-206ENST00000558157 FXYD2P54710 66 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 CACNG7P62955 275 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 TAL2Q16559 108 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 FBXL19-AS1Q494R0 122 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 LINC01559Q495D7 138 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 GAGE13Q4V321 117 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 MORN5Q5VZ52 161 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 LINC00322Q6ZN03 302 aaPredicted RBP8.69□□□□□ -1.02
USP3-206ENST00000558157 VCX2Q9H322 139 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 FZR1Q9UM11 496 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 EPG5Q9HCE0 2579 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 TRBV6-1A0A0K0K1D8 114 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 FSTL3O95633 263 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 HBDP02042 147 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 GRPP07492 148 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 COL8A1P27658 744 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 NMUP48645 174 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 ALKBH6Q3KRA9 238 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 RPL39P5Q59GN2 51 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 C8orf86Q6ZUL3 223 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 PCP2Q8IVA1 136 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 KLF14Q8TD94 323 aaPredicted RBP8.69□□□□□ -1.02
USP3-206ENST00000558157 RNASE6Q93091 150 aaKnown RBP8.69□□□□□ -1.02
USP3-206ENST00000558157 PGPEP1Q9NXJ5 209 aa8.69□□□□□ -1.02
USP3-206ENST00000558157 TIMM8BQ9Y5J9 83 aaPredicted RBP8.69□□□□□ -1.02
USP3-206ENST00000558157 ZFYVE26Q68DK2 2539 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 INS-IGF2F8WCM5 200 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 RNASE2P10153 161 aaKnown RBP8.68□□□□□ -1.02
USP3-206ENST00000558157 CD40P25942 277 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 ETDBQ3ZM63 59 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 ZNF493Q6ZR52 646 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 MOB3BQ86TA1 216 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 CEND1Q8N111 149 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 TMEM116Q8NCL8 245 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 HINT2Q9BX68 163 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 FAM234AQ9H0X4 552 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 ERG28Q9UKR5 140 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 HEATR1Q9H583 2144 aaKnown RBP8.68□□□□□ -1.02
USP3-206ENST00000558157 PGPA6NDG6 321 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 IGLL5B9A064 214 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 UPK2O00526 184 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 SLC25A17O43808 307 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 GNG5P63218 68 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 MSMPQ1L6U9 139 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 IFI27L1Q96BM0 104 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 ZNF479Q96JC4 524 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 CHAC1Q9BUX1 264 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 LINC00312Q9Y6C7 94 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 U3KQK5 164 aa8.68□□□□□ -1.02
USP3-206ENST00000558157 HIVEP3Q5T1R4 2406 aa8.67□□□□□ -1.02
USP3-206ENST00000558157 FBLL1A6NHQ2 334 aaKnown RBP8.67□□□□□ -1.02
USP3-206ENST00000558157 PRO0461Q9UI25 63 aa8.67□□□□□ -1.02
USP3-206ENST00000558157 OVOL3O00110 214 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 LOXL3P58215 753 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 BSPH1Q075Z2 132 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 MBNL2Q5VZF2 373 aaKnown RBP8.66□□□□□ -1.02
USP3-206ENST00000558157 PPP1R35Q8TAP8 253 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 LINC01560Q8TB33 94 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 RITA1Q96K30 269 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 CXXC4Q9H2H0 198 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 WNT9BO14905 357 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 TIMM8AO60220 97 aaPredicted RBP8.66□□□□□ -1.02
USP3-206ENST00000558157 TCRAP04437 139 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 SPINK8P0C7L1 97 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 IFI27P40305 119 aaPredicted RBP8.66□□□□□ -1.02
USP3-206ENST00000558157 PATE2Q6UY27 113 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 C11orf53Q8IXP5 236 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 THAP8Q8NA92 274 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 ARPC1AQ92747 370 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 CADP27708 2225 aa8.66□□□□□ -1.02
USP3-206ENST00000558157 ADGRG4Q8IZF6 3080 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 ERHP84090 104 aaKnown RBP8.65□□□□□ -1.02
USP3-206ENST00000558157 PAX8Q06710 450 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 SH2D6Q7Z4S9 175 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 C1QTNF4Q9BXJ3 329 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 ZMAT4Q9H898 229 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 NHP2Q9NX24 153 aaKnown RBP8.65□□□□□ -1.02
USP3-206ENST00000558157 F11RQ9Y624 299 aaKnown RBP8.65□□□□□ -1.02
USP3-206ENST00000558157 APOMO95445 188 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 GLRXP35754 106 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 FOXI1Q12951 378 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 PRR31Q5SQ13 230 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 LINC00305Q7Z4B0 112 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 Q86TA4 180 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 ZNF843Q8N446 348 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 ITLN2Q8WWU7 325 aaPredicted RBP8.65□□□□□ -1.02
USP3-206ENST00000558157 C18orf15Q96N68 181 aa8.65□□□□□ -1.02
USP3-206ENST00000558157 H3BMG7 143 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 ZNF134P52741 427 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms