RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 NHLRC4P0CG21 123 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-217ENST00000555116 GATA2P23769 480 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-217ENST00000555116 TFPI2P48307 235 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 S100A12P80511 92 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 ICAM4Q14773 271 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 LCN15Q6UWW0 184 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 CYP2G1PQ6ZSU1 146 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 CBLN2Q8IUK8 224 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 RPP25LQ8N5L8 163 aaKnown RBP10.58□□□□□ -0.72
SHMT2-217ENST00000555116 MS4A6AQ9H2W1 248 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 SRD5A3Q9H8P0 318 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 ZNF709Q8N972 641 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 FAM110AQ9BQ89 295 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 WDR83OSQ9Y284 106 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 TRAV2A0A0B4J234 112 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 ZNF98A6NK75 572 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 MBP02144 154 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 SRP19P09132 144 aaKnown RBP10.57□□□□□ -0.72
SHMT2-217ENST00000555116 RPL11P62913 178 aaKnown RBP10.57□□□□□ -0.72
SHMT2-217ENST00000555116 PAFAH1B2P68402 229 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 CTAG1AP78358 180 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 KHDC3LQ587J8 217 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 SOHLH1Q5JUK2 328 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 FFAR4Q5NUL3 377 aa10.57□□□□□ -0.72
SHMT2-217ENST00000555116 LOC102723971A0A1B0GUV8 181 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 MAP1LC3B2A6NCE7 125 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 PCP4L1A6NKN8 68 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 C17orf112F2Z3M2 114 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 AKR1D1P51857 326 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 FGF8P55075 233 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-217ENST00000555116 TEPPQ6URK8 271 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 WFDC3Q8IUB2 231 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 RXFP4Q8TDU9 374 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 MAP1LC3BQ9GZQ8 125 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 SLC39A9Q9NUM3 307 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 GNG13Q9P2W3 67 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 AGRNO00468 2067 aa10.56□□□□□ -0.72
SHMT2-217ENST00000555116 HELTA6NFD8 242 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 MPDU1O75352 247 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 FAM24BQ8N5W8 94 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 OR10G4Q8NGN3 311 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 OR10G9Q8NGN4 311 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 OR10G7Q8NGN6 311 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 TENM3Q9P273 2699 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 K7EQG2 157 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 SELENOTP62341 195 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 PMS2P11Q13670 270 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 STXBP6Q8NFX7 210 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 DCANP1Q8TF63 244 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 MGST2Q99735 147 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 TM2D3Q9BRN9 247 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 MAP6D1Q9H9H5 199 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 SLC45A2Q9UMX9 530 aa10.55□□□□□ -0.72
SHMT2-217ENST00000555116 CTXND1A0A1B0GTU2 59 aa10.54□□□□□ -0.72
SHMT2-217ENST00000555116 BCL2P10415 239 aa10.54□□□□□ -0.72
SHMT2-217ENST00000555116 ORM2P19652 201 aa10.54□□□□□ -0.72
SHMT2-217ENST00000555116 RPL35P42766 123 aaKnown RBP10.54□□□□□ -0.72
SHMT2-217ENST00000555116 CMC4P56277 68 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-217ENST00000555116 PLP1P60201 277 aa10.54□□□□□ -0.72
SHMT2-217ENST00000555116 C1orf194Q5T5A4 169 aa10.54□□□□□ -0.72
SHMT2-217ENST00000555116 SIGLEC15Q6ZMC9 328 aa10.54□□□□□ -0.72
SHMT2-217ENST00000555116 C7orf77A4D0Y5 90 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 EIF3GO75821 320 aaKnown RBP eCLIP10.53□□□□□ -0.72
SHMT2-217ENST00000555116 RAB5BP61020 215 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 CYB561D1Q8N8Q1 229 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 OR1B1Q8NGR6 318 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 ACTR3CQ9C0K3 210 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-217ENST00000555116 SLC25A22Q9H936 323 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 M0R036 132 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 LINC00869P0C866 280 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 B2MP61769 119 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 ZNF124Q15973 351 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 ACOT6Q3I5F7 207 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-217ENST00000555116 APRG1Q8IVJ8 170 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 RAB24Q969Q5 203 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 C12orf57Q99622 126 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 RPS10P5Q9NQ39 176 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 SMCO4Q9NRQ5 59 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 DOK5Q9P104 306 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 U3KQK5 164 aa10.53□□□□□ -0.72
SHMT2-217ENST00000555116 HUWE1Q7Z6Z7 4374 aaKnown RBP10.52□□□□□ -0.72
SHMT2-217ENST00000555116 AKR1C3P42330 323 aa10.52□□□□□ -0.73
SHMT2-217ENST00000555116 CEBPGP53567 150 aa10.52□□□□□ -0.73
SHMT2-217ENST00000555116 GGTLC1Q9BX51 225 aa10.52□□□□□ -0.73
SHMT2-217ENST00000555116 NRN1Q9NPD7 142 aa10.52□□□□□ -0.73
SHMT2-217ENST00000555116 VAX2Q9UIW0 290 aa10.52□□□□□ -0.73
SHMT2-217ENST00000555116 STAB2Q8WWQ8 2551 aa10.52□□□□□ -0.73
SHMT2-217ENST00000555116 LOC102724200A0A096LPH7 203 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-217ENST00000555116 H3BQ15 152 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 HMGB3O15347 200 aaKnown RBP10.51□□□□□ -0.73
SHMT2-217ENST00000555116 HYPMO75409 117 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 IFNA1P01562 189 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 DEFB131AP59861 70 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 RHEBQ15382 184 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 PATE2Q6UY27 113 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 C15orf54Q8N8G6 183 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 H3BRN7 92 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 MEOX2P50222 304 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 GCSAMLQ5JQS6 135 aa10.51□□□□□ -0.73
SHMT2-217ENST00000555116 OR8I2Q8N0Y5 310 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 177.3 ms