RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TMEM155Q4W5P6 130 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 SIGLECL1Q8N7X8 197 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 CKLFQ9UBR5 152 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 ALPK3Q96L96 1907 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 ICE1Q9Y2F5 2266 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 C2CD3Q4AC94 2353 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 ZNF860A6NHJ4 632 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 ORC5O43913 435 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 C1QCP02747 245 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 NCALDP61601 193 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 RHOBP62745 196 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 NUMA1Q14980 2115 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 LYRM7Q5U5X0 104 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 DHFR2Q86XF0 187 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 GINS3Q9BRX5 216 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 C8orf4Q9NR00 106 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 OSTCQ9NRP0 149 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 PRNDQ9UKY0 176 aa2.7□□□□□ -1.98
LIMA1-210ENST00000552045 EP300Q09472 2414 aaPredicted RBP2.7□□□□□ -1.98
LIMA1-210ENST00000552045 ARFGEF2Q9Y6D5 1785 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 ANKRD31Q8N7Z5 1873 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 A0A0G2JMZ2 1700 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 DDX60LQ5H9U9 1706 aaKnown RBP2.69□□□□□ -1.98
LIMA1-210ENST00000552045 C1orf196B1AJZ1 125 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 PRB1P04280 392 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 HTR1AP08908 422 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 TAS2R41P59536 307 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 GNG3P63215 75 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 LCN15Q6UWW0 184 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 ZNF439Q8NDP4 499 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 OR8B3Q8NGG8 313 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 OR13C6PQ8NH95 151 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 AMMECR1Q9Y4X0 333 aaPredicted RBP2.69□□□□□ -1.98
LIMA1-210ENST00000552045 RTL9Q8NET4 1388 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 SPTA1P02549 2419 aa2.69□□□□□ -1.98
LIMA1-210ENST00000552045 SPTAN1Q13813 2472 aaKnown RBP2.68□□□□□ -1.98
LIMA1-210ENST00000552045 PIEZO2Q9H5I5 2752 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 CEP250Q9BV73 2442 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 A0A0D9SG52 128 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 G3V2T6 193 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 CYB5BO43169 146 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 ZNF737O75373 536 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 IFNA7P01567 189 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 SPI1P17947 270 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 KHDC3LQ587J8 217 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 DPPA3Q6W0C5 159 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 SMIM20Q8N5G0 67 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 OR5A1Q8NGJ0 315 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 FAM172AQ8WUF8 416 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 MED29Q9NX70 200 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 ZNF831Q5JPB2 1677 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 ZZEF1O43149 2961 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 VPS13AQ96RL7 3174 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 FRYQ5TBA9 3013 aa2.68□□□□□ -1.98
LIMA1-210ENST00000552045 TEX15Q9BXT5 2789 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 A0A087X0T9 212 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 IBA57-AS1B1ANH7 110 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 TCL1BO95988 128 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 PMP2P02689 132 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 SHBGP04278 402 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 FABP1P07148 127 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 RPSAP08865 295 aaKnown RBP2.67□□□□□ -1.98
LIMA1-210ENST00000552045 GNG5P63218 68 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 DEFB103AP81534 67 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 ZNF345Q14585 488 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 RHEBQ15382 184 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 TRIQKQ629K1 86 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 AAED1Q7RTV5 226 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 KRTAP13-1Q8IUC0 172 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 WFDC11Q8NEX6 87 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 OR8D4Q8NGM9 314 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 WFDC5Q8TCV5 224 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 SELENOSQ9BQE4 189 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 IMUPQ9GZP8 106 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 TMEM133Q9H2Q1 129 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 SS18L2Q9UHA2 77 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 FBN2P35556 2912 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 TECTAO75443 2155 aa2.67□□□□□ -1.98
LIMA1-210ENST00000552045 MDC1Q14676 2089 aaKnown RBP2.67□□□□□ -1.98
LIMA1-210ENST00000552045 SMG1Q96Q15 3661 aaKnown RBP2.66□□□□□ -1.98
LIMA1-210ENST00000552045 IGKV1-9A0A0C4DH69 117 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 SDCBPO00560 298 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-210ENST00000552045 NDUFC2O95298 119 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 CRYGAP11844 174 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 COX6A1P12074 109 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 CRYBA4P53673 196 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 NNATQ16517 81 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 AKR1C8PQ5T2L2 129 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 C7orf65Q6ZTY9 151 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 DEFB128Q7Z7B8 93 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 C9orf163Q8N9P6 203 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 ADAT3Q96EY9 351 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-210ENST00000552045 BOLA2Q9H3K6 86 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 TRABDQ9H4I3 376 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 LYRM2Q9NU23 88 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-210ENST00000552045 UFC1Q9Y3C8 167 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 V9GYQ6 96 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 PRRC2BQ5JSZ5 2229 aaKnown RBP2.66□□□□□ -1.98
LIMA1-210ENST00000552045 GBF1Q92538 1859 aa2.66□□□□□ -1.98
LIMA1-210ENST00000552045 PCNX2A6NKB5 2137 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms