RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 S100ZQ8WXG8 99 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 TMEM203Q969S6 136 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 RAB40CQ96S21 281 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 COMMD5Q9GZQ3 224 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 CCL28Q9NRJ3 127 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 TMEM14BQ9NUH8 114 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 CLEC5AQ9NY25 188 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 TAS2R8Q9NYW2 309 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ALG5Q9Y673 324 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 V9GY05 133 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 TRAV1-2A0A0B4J238 106 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 NBDYA0A0U1RRE5 68 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 SMIM9A6NGZ8 99 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 IFITM5A6NNB3 132 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 H3BMM0 161 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 DNASE2O00115 360 aaPredicted RBP2.46□□□□□ -2.02
LIMA1-206ENST00000550611 SULT1C2O00338 296 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 TNFSF12O43508 249 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 SCGB2A1O75556 95 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 MED6O75586 246 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 ARL6IP5O75915 188 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 YIF1AO95070 293 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 TNFAIP8O95379 198 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 TMEM50AO95807 157 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 SPART-AS1P0CW21 52 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 GADD45AP24522 165 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 CRYBB3P26998 211 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 RPS25P62851 125 aaKnown RBP2.46□□□□□ -2.02
LIMA1-206ENST00000550611 HAMPP81172 84 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 FABP5Q01469 135 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 ARL6IP1Q15041 203 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 Q56UQ5 140 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 ACTL10Q5JWF8 245 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 DHRS11Q6UWP2 260 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 LINC00299Q6ZSB3 139 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 AHSA2Q719I0 299 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 SPATA12Q7Z6I5 190 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 C6orf223Q8N319 242 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 DHRSXQ8N5I4 330 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 UBAC2Q8NBM4 344 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 BPIFB6Q8NFQ5 453 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 ZNRF2Q8NHG8 242 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 AP3S1Q92572 193 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 LSM10Q969L4 123 aaKnown RBP2.46□□□□□ -2.02
LIMA1-206ENST00000550611 ZNF2Q9BSG1 426 aaPredicted RBP2.46□□□□□ -2.02
LIMA1-206ENST00000550611 YTHDF1Q9BYJ9 559 aaKnown RBP2.46□□□□□ -2.02
LIMA1-206ENST00000550611 VCX2Q9H322 139 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 HRASLSQ9HDD0 168 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 NIT2Q9NQR4 276 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 ANXA10Q9UJ72 324 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 GOLT1BQ9Y3E0 138 aa2.46□□□□□ -2.02
LIMA1-206ENST00000550611 IGHV3-66A0A0C4DH42 116 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 A0A1B0GV90 55 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 TMEM189A5PLL7 270 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 LINC00862A6NCI5 91 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 METTL21EPA6NDL7 271 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 TMEM238C9JI98 176 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PGLYRP1O75594 196 aaPredicted RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 MT-CO2P00403 227 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PPYP01298 95 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 IGHV3-48P01763 117 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 ZNF688P0C7X2 276 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PTHLHP12272 177 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 NPPCP23582 126 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 F2RP25116 425 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PSMA1P25786 263 aaKnown RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 GNRHRP30968 328 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 FGF9P31371 208 aaPredicted RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 FCGR2CP31995 323 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 GPX4P36969 197 aaPredicted RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PAX9P55771 341 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 OR10A3P58181 314 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 UBE2G2P60604 165 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 ASAH1Q13510 395 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 TRAM1Q15629 374 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 LRRC37A5PQ49AS3 106 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 SPANXN2Q5MJ10 180 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 ZNF818PQ6ZRF7 136 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 COX8CQ7Z4L0 72 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 UBE2DNLQ8IWF7 75 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 SELENOHQ8IZQ5 122 aaKnown RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 MTURNQ8N3F0 131 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PACRGLQ8N7B6 248 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 OR5AP2Q8NGF4 316 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 OR13F1Q8NGS4 319 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 SLC25A46Q96AG3 418 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 NARS2Q96I59 477 aaKnown RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 CNBD2Q96M20 576 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 C7orf50Q9BRJ6 194 aaKnown RBP2.45□□□□□ -2.02
LIMA1-206ENST00000550611 GINS3Q9BRX5 216 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 NIPSNAP3BQ9BS92 247 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 C2orf88Q9BSF0 95 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 DUSP21Q9H596 190 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 RNF167Q9H6Y7 350 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 FKBP11Q9NYL4 201 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 COMMD9Q9P000 198 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 XCL2Q9UBD3 114 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 RABAC1Q9UI14 185 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 PRNDQ9UKY0 176 aa2.45□□□□□ -2.02
LIMA1-206ENST00000550611 OR51B2Q9Y5P1 312 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms