RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ZNF586Q9NXT0 402 aa15.79■□□□□ 0.12
VPS29-206ENST00000549578 IGFL4Q6B9Z1 124 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 EIF5AL1Q6IS14 154 aaKnown RBP15.78■□□□□ 0.12
VPS29-206ENST00000549578 C16orf92Q96LL3 132 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 MAP6D1Q9H9H5 199 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 UMAD1C9J7I0 102 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 SLC17A3O00476 420 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 HIST1H1EP10412 219 aaKnown RBP15.78■□□□□ 0.12
VPS29-206ENST00000549578 UBE2L3P68036 154 aaKnown RBP15.78■□□□□ 0.12
VPS29-206ENST00000549578 RNF141Q8WVD5 230 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 FXYD5Q96DB9 178 aa15.78■□□□□ 0.12
VPS29-206ENST00000549578 CTXND1A0A1B0GTU2 59 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 K7EIL1 84 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 STAG3L2P0CL84 134 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 STAG3L3P0CL85 134 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 ARL14EPLP0DKL9 152 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 DEFB131AP59861 70 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 PSMG4Q5JS54 123 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 LCN15Q6UWW0 184 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 FAM213BQ8TBF2 198 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 LRRC20Q8TCA0 184 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 BLNKQ8WV28 456 aa15.77■□□□□ 0.11
VPS29-206ENST00000549578 TRAV8-2A0A0B4J237 113 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 OR11H12B2RN74 326 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 ISLRO14498 428 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 PSMB3P49720 205 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 SNRPD3P62318 126 aaKnown RBP15.76■□□□□ 0.11
VPS29-206ENST00000549578 DEFA6Q01524 100 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 ZNF124Q15973 351 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 PQLC2Q6ZP29 291 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 APRG1Q8IVJ8 170 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 DEFB125Q8N687 156 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 RNF182Q8N6D2 247 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 LINC00052Q96N35 136 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 MEGF8Q7Z7M0 2845 aa15.76■□□□□ 0.11
VPS29-206ENST00000549578 TRBV19A0A075B6N1 114 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 NBEAP1P0C6P0 100 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 ID1P41134 155 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 GUK1Q16774 197 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 FAM74A1Q5RGS3 127 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 SAMD13Q5VXD3 122 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 SAT2Q96F10 170 aaPredicted RBP15.75■□□□□ 0.11
VPS29-206ENST00000549578 C20orf173Q96LM9 149 aa15.75■□□□□ 0.11
VPS29-206ENST00000549578 ZNF331Q9NQX6 463 aaPredicted RBP15.75■□□□□ 0.11
VPS29-206ENST00000549578 HLA-DMBP28068 263 aa15.74■□□□□ 0.11
VPS29-206ENST00000549578 ALKAL2Q6UX46 152 aa15.74■□□□□ 0.11
VPS29-206ENST00000549578 FAM110AQ9BQ89 295 aa15.74■□□□□ 0.11
VPS29-206ENST00000549578 NDUFB4O95168 129 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 SULT1A2P50226 295 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 FGF8P55075 233 aaPredicted RBP15.73■□□□□ 0.11
VPS29-206ENST00000549578 PHYHIPLQ96FC7 376 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 SLC50A1Q9BRV3 221 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 MAP1LC3B2A6NCE7 125 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 CXorf1O96002 111 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 GCHFRP30047 84 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 CMC4P56277 68 aaPredicted RBP15.73■□□□□ 0.11
VPS29-206ENST00000549578 DEFB1P60022 68 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 DPPA3Q6W0C5 159 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 IQCF2Q8IXL9 164 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 CITED4Q96RK1 184 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 MAP1LC3BQ9GZQ8 125 aa15.73■□□□□ 0.11
VPS29-206ENST00000549578 ZNF253O75346 499 aa15.72■□□□□ 0.11
VPS29-206ENST00000549578 IGHV4-30-4P0DP06 118 aa15.72■□□□□ 0.11
VPS29-206ENST00000549578 RAB5CP51148 216 aa15.72■□□□□ 0.11
VPS29-206ENST00000549578 PDE6HQ13956 83 aa15.72■□□□□ 0.11
VPS29-206ENST00000549578 PRB4P10163 310 aaPredicted RBP15.71■□□□□ 0.11
VPS29-206ENST00000549578 TMPRSS5Q9H3S3 457 aa15.71■□□□□ 0.11
VPS29-206ENST00000549578 SRD5A3Q9H8P0 318 aa15.71■□□□□ 0.11
VPS29-206ENST00000549578 EXOC3-AS1Q8N2X6 119 aa15.7■□□□□ 0.1
VPS29-206ENST00000549578 SFT2D1Q8WV19 159 aa15.7■□□□□ 0.1
VPS29-206ENST00000549578 FBN3Q75N90 2809 aa15.7■□□□□ 0.1
VPS29-206ENST00000549578 A0A1B0GV50 99 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 KNCNA6PVL3 124 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 RANP62826 216 aaKnown RBP15.69■□□□□ 0.1
VPS29-206ENST00000549578 PSG3Q16557 428 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 DEFB121Q5J5C9 76 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 ZNF738Q8NE65 137 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 MRAPQ8TCY5 172 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 MBD3L1Q8WWY6 194 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 TUBA4BQ9H853 241 aa15.69■□□□□ 0.1
VPS29-206ENST00000549578 H2AFB1P0C5Y9 115 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 PSG9Q00887 426 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 ACTL10Q5JWF8 245 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 ZNF705FA8MVS1 300 aaPredicted RBP15.68■□□□□ 0.1
VPS29-206ENST00000549578 F6UB75 175 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 M0R3E3 92 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 ICAM4Q14773 271 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 GDF5OSQ5U4N7 250 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 SUN5Q8TC36 379 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 TMEM167BQ9NRX6 74 aa15.68■□□□□ 0.1
VPS29-206ENST00000549578 AGRNO00468 2067 aa15.67■□□□□ 0.1
VPS29-206ENST00000549578 ZNF705EA8MWA4 302 aaPredicted RBP15.67■□□□□ 0.1
VPS29-206ENST00000549578 Q9H3A6 140 aa15.67■□□□□ 0.1
VPS29-206ENST00000549578 AAMDCQ9H7C9 122 aa15.67■□□□□ 0.1
VPS29-206ENST00000549578 RPUSD4Q96CM3 377 aaKnown RBP15.66■□□□□ 0.1
VPS29-206ENST00000549578 RBMY1BA6NDE4 496 aaKnown RBP15.65■□□□□ 0.1
VPS29-206ENST00000549578 RBMY1EA6NEQ0 496 aaKnown RBP15.65■□□□□ 0.1
VPS29-206ENST00000549578 RBMY1DP0C7P1 496 aaKnown RBP15.65■□□□□ 0.1
VPS29-206ENST00000549578 FRMD6-AS1P0C7T7 363 aa15.65■□□□□ 0.1
VPS29-206ENST00000549578 TEX261Q6UWH6 196 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms