RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 SNRPCP09234 159 aaKnown RBP17.23■□□□□ 0.35
SMARCD1-203ENST00000547247 IGHV4-30-4P0DP06 118 aa17.23■□□□□ 0.35
SMARCD1-203ENST00000547247 KHDC3LQ587J8 217 aa17.23■□□□□ 0.35
SMARCD1-203ENST00000547247 LCN15Q6UWW0 184 aa17.23■□□□□ 0.35
SMARCD1-203ENST00000547247 TUBA4BQ9H853 241 aa17.23■□□□□ 0.35
SMARCD1-203ENST00000547247 H3BQ15 152 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 OR7C2O60412 319 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 PYYP10082 97 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 HIST1H1EP10412 219 aaKnown RBP17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 GUK1Q16774 197 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 PSMG4Q5JS54 123 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 APRG1Q8IVJ8 170 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 PAXXQ9BUH6 204 aa17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 ACTR3CQ9C0K3 210 aaPredicted RBP17.22■□□□□ 0.35
SMARCD1-203ENST00000547247 RAB24Q969Q5 203 aa17.21■□□□□ 0.35
SMARCD1-203ENST00000547247 ZNF586Q9NXT0 402 aa17.21■□□□□ 0.35
SMARCD1-203ENST00000547247 A8MZ25 164 aa17.2■□□□□ 0.34
SMARCD1-203ENST00000547247 EIF3GO75821 320 aaKnown RBP eCLIP17.2■□□□□ 0.34
SMARCD1-203ENST00000547247 LINC00052Q96N35 136 aa17.2■□□□□ 0.34
SMARCD1-203ENST00000547247 SRD5A3Q9H8P0 318 aa17.2■□□□□ 0.34
SMARCD1-203ENST00000547247 H3BTX0 84 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 PQLC2Q6ZP29 291 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 RNF141Q8WVD5 230 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 TMED6Q8WW62 240 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 SAT2Q96F10 170 aaPredicted RBP17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 SLC50A1Q9BRV3 221 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 PRKDCP78527 4128 aaKnown RBP17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 UMAD1C9J7I0 102 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 HMGB3O15347 200 aaKnown RBP17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 OR10J4P0C629 311 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 ZNF124Q15973 351 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 EIF5AL1Q6IS14 154 aaKnown RBP17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 ZNF503Q96F45 646 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 CITED4Q96RK1 184 aa17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 ZNF331Q9NQX6 463 aaPredicted RBP17.19■□□□□ 0.34
SMARCD1-203ENST00000547247 TRBV19A0A075B6N1 114 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 TRAV8-2A0A0B4J237 113 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 NBEAP1P0C6P0 100 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 STAG3L2P0CL84 134 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 STAG3L3P0CL85 134 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 IGFL4Q6B9Z1 124 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 FXYD5Q96DB9 178 aa17.18■□□□□ 0.34
SMARCD1-203ENST00000547247 SLC17A3O00476 420 aa17.17■□□□□ 0.34
SMARCD1-203ENST00000547247 ZNF253O75346 499 aa17.17■□□□□ 0.34
SMARCD1-203ENST00000547247 UBE2L3P68036 154 aaKnown RBP17.17■□□□□ 0.34
SMARCD1-203ENST00000547247 PDE6HQ13956 83 aa17.17■□□□□ 0.34
SMARCD1-203ENST00000547247 BLNKQ8WV28 456 aa17.17■□□□□ 0.34
SMARCD1-203ENST00000547247 PLA2G2EQ9NZK7 142 aa17.17■□□□□ 0.34
SMARCD1-203ENST00000547247 CTXND1A0A1B0GTU2 59 aa17.16■□□□□ 0.34
SMARCD1-203ENST00000547247 RNF182Q8N6D2 247 aa17.16■□□□□ 0.34
SMARCD1-203ENST00000547247 FRMD6-AS1P0C7T7 363 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 ARL14EPLP0DKL9 152 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 ZNF726P1Q15940 193 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 C20orf173Q96LM9 149 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 CLEC5AQ9NY25 188 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 BOLA1Q9Y3E2 137 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 SSX7Q7RTT5 188 aa17.15■□□□□ 0.34
SMARCD1-203ENST00000547247 BOLA2-SMG1P6H3BVE0 249 aa17.14■□□□□ 0.33
SMARCD1-203ENST00000547247 NDUFB4O95168 129 aa17.14■□□□□ 0.33
SMARCD1-203ENST00000547247 HLA-DMBP28068 263 aa17.14■□□□□ 0.33
SMARCD1-203ENST00000547247 PSG9Q00887 426 aa17.14■□□□□ 0.33
SMARCD1-203ENST00000547247 PSG3Q16557 428 aa17.14■□□□□ 0.33
SMARCD1-203ENST00000547247 RBMY1BA6NDE4 496 aaKnown RBP17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 RBMY1EA6NEQ0 496 aaKnown RBP17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 KNCNA6PVL3 124 aa17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 CXorf1O96002 111 aa17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 RBMY1DP0C7P1 496 aaKnown RBP17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 FHITP49789 147 aa17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 ACTL10Q5JWF8 245 aa17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 DPPA3Q6W0C5 159 aa17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 STHQ8IWL8 128 aa17.13■□□□□ 0.33
SMARCD1-203ENST00000547247 LOC102724200A0A096LPH7 203 aaPredicted RBP17.12■□□□□ 0.33
SMARCD1-203ENST00000547247 LINC00322Q6ZN03 302 aaPredicted RBP17.12■□□□□ 0.33
SMARCD1-203ENST00000547247 FOXI2Q6ZQN5 318 aa17.12■□□□□ 0.33
SMARCD1-203ENST00000547247 ZNF738Q8NE65 137 aa17.12■□□□□ 0.33
SMARCD1-203ENST00000547247 FAM213BQ8TBF2 198 aa17.12■□□□□ 0.33
SMARCD1-203ENST00000547247 AAMDCQ9H7C9 122 aa17.12■□□□□ 0.33
SMARCD1-203ENST00000547247 GCHFRP30047 84 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 RAB5CP51148 216 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 DEFB1P60022 68 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 PHYHIPLQ96FC7 376 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 SAV1Q9H4B6 383 aaPredicted RBP17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 MAP1LC3B2A6NCE7 125 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 EBLN2Q6P2I7 272 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 MAP1LC3BQ9GZQ8 125 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 TMEM167BQ9NRX6 74 aa17.11■□□□□ 0.33
SMARCD1-203ENST00000547247 RPL35AP18077 110 aaKnown RBP17.1■□□□□ 0.33
SMARCD1-203ENST00000547247 RANP62826 216 aaKnown RBP17.1■□□□□ 0.33
SMARCD1-203ENST00000547247 GDF5OSQ5U4N7 250 aa17.1■□□□□ 0.33
SMARCD1-203ENST00000547247 LYPD1Q8N2G4 141 aa17.1■□□□□ 0.33
SMARCD1-203ENST00000547247 RPUSD4Q96CM3 377 aaKnown RBP17.1■□□□□ 0.33
SMARCD1-203ENST00000547247 PRELID1Q9Y255 219 aa17.1■□□□□ 0.33
SMARCD1-203ENST00000547247 F6UB75 175 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 HLA-DRB4P13762 266 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 SULT1A2P50226 295 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 IQCF2Q8IXL9 164 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 EXOC3-AS1Q8N2X6 119 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 B9D2Q9BPU9 175 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 HLA-DRB4X5D2U9 266 aa17.09■□□□□ 0.33
SMARCD1-203ENST00000547247 A0A0J9YX75 114 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms