RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 IGHV3-21A0A0B4J1V1 117 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 TRAV5A0A0B4J249 113 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 LOC105371267A0A1B0GV96 52 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 PGPA6NDG6 321 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 PPP5D1E7EU14 171 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 EIF3GO75821 320 aaKnown RBP eCLIP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 SLC25A5P05141 298 aaKnown RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 CLEC3BP05452 202 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 S100A6P06703 90 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 IGLC2P0DOY2 106 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 PYYP10082 97 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 PPIFP30405 207 aaKnown RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 IER3P46695 156 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 RPS10P46783 165 aaKnown RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 CSN1S1P47710 185 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 RANP62826 216 aaKnown RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 KIAA0141Q14154 515 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 CENPWQ5EE01 88 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 CT83Q5H943 113 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 SAMD13Q5VXD3 122 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 MORN5Q5VZ52 161 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 C19orf35Q6ZS72 473 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 NRGNQ92686 78 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 IGF2BP2-AS1Q96M15 143 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 METTL26Q96S19 204 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 FOXC2Q99958 501 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 Q9H3A6 140 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 SAV1Q9H4B6 383 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 VPREB3Q9UKI3 123 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 ZFP30Q9Y2G7 519 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 A0A087X0K7 114 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.8□□□□□ -1.64
SYNE1-239ENST00000545694 A0A1W2PS18 150 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 FAM231BA6NCW3 169 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 OR2T8A6NH00 312 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 NDUFA4O00483 81 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 MRPS12O15235 138 aaKnown RBP4.8□□□□□ -1.64
SYNE1-239ENST00000545694 TRGV3P03979 118 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 TCRAP04437 139 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 BMI1P35226 326 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 ERVFC1-1P60608 527 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 SLC35B1P78383 322 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 C9orf152Q5JTZ5 239 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 RASL11AQ6T310 242 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 Q6YL49 198 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 TMEM219Q86XT9 240 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 BAGE2Q86Y30 109 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 OR8I2Q8N0Y5 310 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 LINC00482Q8N8I6 264 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 TMEM75Q8N9X5 138 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 BLNKQ8WV28 456 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 ZNF414Q96IQ9 312 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 Q96MF0 132 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 SLC50A1Q9BRV3 221 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 DERL1Q9BUN8 251 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 PRSS22Q9GZN4 317 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 NPFFR1Q9GZQ6 430 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 IL36BQ9NZH7 164 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 ZNF492Q9P255 531 aa4.8□□□□□ -1.64
SYNE1-239ENST00000545694 FASNP49327 2511 aaKnown RBP4.79□□□□□ -1.64
SYNE1-239ENST00000545694 IGHV3OR16-10A0A075B7F0 116 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 G3V318 75 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 LTAP01374 205 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 IGHG4P01861 327 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 MT-ND6P03923 174 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 ELANEP08246 267 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 GPR183P32249 361 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 TPPP2P59282 170 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 KRTAP10-9P60411 292 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 RPL15P61313 204 aaKnown RBP4.79□□□□□ -1.64
SYNE1-239ENST00000545694 CFHR3Q02985 330 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 USF2Q15853 346 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-239ENST00000545694 RPEL1Q2QD12 228 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 DEFB112Q30KQ8 113 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 IBA57Q5T440 356 aaKnown RBP4.79□□□□□ -1.64
SYNE1-239ENST00000545694 WDR73Q6P4I2 378 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 TOMM20LQ6UXN7 152 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 SIGLEC15Q6ZMC9 328 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 COX8CQ7Z4L0 72 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 TMEM183AQ8IXX5 376 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 OR4B1Q8NGF8 309 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 MRPL53Q96EL3 112 aaKnown RBP4.79□□□□□ -1.64
SYNE1-239ENST00000545694 GRAMD2BQ96HH9 432 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 CCDC140Q96MF4 163 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 ZNF586Q9NXT0 402 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 SOX21Q9Y651 276 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-239ENST00000545694 URGCP-MRPS24S4R325 110 aa4.79□□□□□ -1.64
SYNE1-239ENST00000545694 CELSR1Q9NYQ6 3014 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 GCN1Q92616 2671 aaKnown RBP4.78□□□□□ -1.64
SYNE1-239ENST00000545694 TGIF2-C20orf24A0A0A6YYL0 155 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 A0A1W2PPQ1 181 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 RBAKDNA6NC62 111 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 C5orf52A6NGY3 159 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 A8MWL6 223 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 K7EMT4 169 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 K7EN84 100 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 BUB3O43684 328 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 IGLV2-8P01709 118 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 S100A8P05109 93 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 CXCL1P09341 107 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms