RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SLC25A6P12236 298 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 RPL7P18124 248 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 S100A7P31151 101 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 IL18Q14116 193 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 ACOT7LQ6ZUV0 252 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 PARD6GQ9BYG4 376 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 HIGD1AQ9Y241 93 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 MRPS12O15235 138 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 SYNGR2O43760 224 aa12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 CYP2G1PQ6ZSU1 146 aa12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 RPUSD4Q96CM3 377 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 CIB3Q96Q77 187 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 C20orf144Q9BQM9 153 aa12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 PGPEP1Q9NXJ5 209 aa12.22□□□□□ -0.45
CLSTN3-214ENST00000542663 FLG2Q5D862 2391 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 MED6O75586 246 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 ADAP1O75689 374 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 PLP1P60201 277 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 RAP2BP61225 183 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 SPANXN5Q5MJ07 72 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 LRTM2Q8N967 370 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 DIRAS2Q96HU8 199 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 VSIG2Q96IQ7 327 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 TMPRSS5Q9H3S3 457 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 MCUBQ9NWR8 336 aa12.21□□□□□ -0.45
CLSTN3-214ENST00000542663 SRRM2Q9UQ35 2752 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 A0A096LPF7 62 aa12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 H3BP45 60 aa12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 RLN2P04090 185 aa12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 IL5P05113 134 aa12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 RPP30P78346 268 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 GFI1BQ5VTD9 330 aa12.2□□□□□ -0.46
CLSTN3-214ENST00000542663 HYPMO75409 117 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 OR5G3P0C626 314 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 LINC00869P0C866 280 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 SPCS2Q15005 226 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 TMEM128Q5BJH2 165 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 CDPF1Q6NVV7 123 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 PATE2Q6UY27 113 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 LRRC20Q8TCA0 184 aa12.19□□□□□ -0.46
CLSTN3-214ENST00000542663 PIGBOS1A0A0B4J2F0 54 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 PMS2P5A8MQ11 134 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 SNURFLB1AK76 121 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 SIVA1O15304 175 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 KRTAP10-1P60331 282 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 Q6ZTI0 123 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 CCDC28AQ8IWP9 274 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 FRZBQ92765 325 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 ZNF331Q9NQX6 463 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 RABL2AQ9UBK7 228 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 RABL2BQ9UNT1 228 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 STRAPQ9Y3F4 350 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 TNFRSF18Q9Y5U5 241 aa12.18□□□□□ -0.46
CLSTN3-214ENST00000542663 SMCO3A2RU48 225 aa12.17□□□□□ -0.46
CLSTN3-214ENST00000542663 PRAC2D3DTV9 90 aa12.17□□□□□ -0.46
CLSTN3-214ENST00000542663 SNRPCP09234 159 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-214ENST00000542663 ERVFC1-1P60608 527 aa12.17□□□□□ -0.46
CLSTN3-214ENST00000542663 TMED4Q7Z7H5 227 aa12.17□□□□□ -0.46
CLSTN3-214ENST00000542663 PTTG2Q9NZH5 202 aa12.17□□□□□ -0.46
CLSTN3-214ENST00000542663 DNAH10OSP0CZ25 163 aa12.16□□□□□ -0.46
CLSTN3-214ENST00000542663 CXCL2P19875 107 aa12.16□□□□□ -0.46
CLSTN3-214ENST00000542663 DAZ2Q13117 558 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-214ENST00000542663 LCN15Q6UWW0 184 aa12.16□□□□□ -0.46
CLSTN3-214ENST00000542663 ZBTB8BQ8NAP8 495 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-214ENST00000542663 LINC00854A0A1B0GVQ3 168 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 SLC17A3O00476 420 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 CCNKO75909 580 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 HOXB5P09067 269 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 VAMP1P23763 118 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 SELENOTP62341 195 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 CCDC190Q86UF4 302 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 SLC50A1Q9BRV3 221 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 ARL6Q9H0F7 186 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 ARV1Q9H2C2 271 aa12.15□□□□□ -0.46
CLSTN3-214ENST00000542663 TRAV12-3A0A0B4J271 114 aa12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 J3KRW8 73 aa12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 EREGO14944 169 aa12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 SMR3BP02814 79 aaPredicted RBP12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 ANXA7P20073 488 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 RAB2BQ8WUD1 216 aa12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 SOSTQ9BQB4 213 aa12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
CLSTN3-214ENST00000542663 H3BTX0 84 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 K7EPK0 472 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 NXPH4O95158 308 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 SFT2D2O95562 160 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 RRAS2P62070 204 aaPredicted RBP12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 ID3Q02535 119 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 PPP1R1AQ13522 171 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 C18orf15Q96N68 181 aa12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 RSL24D1Q9UHA3 163 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-214ENST00000542663 A0A087WTM6 91 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 CT45A10P0DMU9 189 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 POLR2GP62487 172 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 SLC38A11Q08AI6 406 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 MORN5Q5VZ52 161 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 LINC00305Q7Z4B0 112 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 C11orf72Q8NBR9 251 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 DYNC2LI1Q8TCX1 351 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 ZNF431Q8TF32 576 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms