RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 IL17RELQ6ZVW7 336 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 C8orf31Q8N9H6 132 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 PAGE4O60829 102 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 ZNF672Q499Z4 452 aaPredicted RBP8.93□□□□□ -0.98
CDH3-203ENST00000542274 FAM53AQ6NSI3 398 aaPredicted RBP8.93□□□□□ -0.98
CDH3-203ENST00000542274 MMD2Q8IY49 270 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 EXOC3-AS1Q8N2X6 119 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 Q8NA96 180 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 IL1F10Q8WWZ1 152 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 JPT2Q9H910 190 aa8.93□□□□□ -0.98
CDH3-203ENST00000542274 NAPSAO96009 420 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 CD3EP07766 207 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 HERV-K104P61576 105 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 SPRNQ5BIV9 151 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 ZNF818PQ6ZRF7 136 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 FAM110DQ8TAY7 271 aaPredicted RBP8.92□□□□□ -0.98
CDH3-203ENST00000542274 COL6A6A6NMZ7 2263 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 WNT9BO14905 357 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 HLA-DQA1P01909 254 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 OPRK1P41145 380 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 CFAP126Q5VTH2 177 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 TEX45Q8NA69 505 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 H1FXQ92522 213 aaKnown RBP8.92□□□□□ -0.98
CDH3-203ENST00000542274 FAM215AQ9Y5M1 114 aa8.92□□□□□ -0.98
CDH3-203ENST00000542274 DIDO1Q9BTC0 2240 aaKnown RBP8.91□□□□□ -0.98
CDH3-203ENST00000542274 NDUFB4O95168 129 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 LEPROTL1O95214 131 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 GNB1P62873 340 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 C1orf195Q5TG92 126 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 Q6ZT83 130 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 LINC00336Q6ZUF6 198 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 WDR31Q8NA23 367 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 CCL28Q9NRJ3 127 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 FOXA2Q9Y261 457 aaPredicted RBP8.91□□□□□ -0.98
CDH3-203ENST00000542274 CACNA1DQ01668 2161 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 C11orf94C9JXX5 98 aa8.91□□□□□ -0.98
CDH3-203ENST00000542274 KLF14Q8TD94 323 aaPredicted RBP8.91□□□□□ -0.98
CDH3-203ENST00000542274 SLC25A39Q9BZJ4 359 aaPredicted RBP8.91□□□□□ -0.98
CDH3-203ENST00000542274 NHP2Q9NX24 153 aaKnown RBP8.91□□□□□ -0.98
CDH3-203ENST00000542274 DUSP14O95147 198 aaKnown RBP8.9□□□□□ -0.98
CDH3-203ENST00000542274 CECR9P0C854 216 aa8.9□□□□□ -0.98
CDH3-203ENST00000542274 PLA2G5P39877 138 aa8.9□□□□□ -0.98
CDH3-203ENST00000542274 TBC1D26Q86UD7 250 aa8.9□□□□□ -0.98
CDH3-203ENST00000542274 LINC00479Q96M42 142 aa8.9□□□□□ -0.98
CDH3-203ENST00000542274 RETNQ9HD89 108 aa8.9□□□□□ -0.98
CDH3-203ENST00000542274 IFI27L2Q9H2X8 130 aa8.9□□□□□ -0.98
CDH3-203ENST00000542274 CACNA1AO00555 2505 aa8.9□□□□□ -0.99
CDH3-203ENST00000542274 TRBV20OR9-2A0A075B6H5 130 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 IZUMO4Q1ZYL8 232 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 PCSK4Q6UW60 755 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 BCL6BQ8N143 479 aaPredicted RBP8.89□□□□□ -0.99
CDH3-203ENST00000542274 C18orf12Q96KH6 178 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 TMEM222Q9H0R3 208 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 ITPR1Q14643 2758 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 ROS1P08922 2347 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 AMY1AP04745 511 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 ECI1P42126 302 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 MSMPQ1L6U9 139 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 C4orf48Q5BLP8 95 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 Q6P435 159 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 DLX4Q92988 240 aaPredicted RBP8.89□□□□□ -0.99
CDH3-203ENST00000542274 SLC25A22Q9H936 323 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 F11RQ9Y624 299 aaKnown RBP8.89□□□□□ -0.99
CDH3-203ENST00000542274 C3orf85A0A1B0GTC6 90 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 J3QT63 122 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 ZNF816Q0VGE8 651 aaPredicted RBP8.89□□□□□ -0.99
CDH3-203ENST00000542274 TEN1Q86WV5 123 aa8.89□□□□□ -0.99
CDH3-203ENST00000542274 RPP25LQ8N5L8 163 aaKnown RBP8.89□□□□□ -0.99
CDH3-203ENST00000542274 SNRNP40Q96DI7 357 aaKnown RBP8.89□□□□□ -0.99
CDH3-203ENST00000542274 IGKV3-15P01624 115 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 SERF2P84101 59 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 Q6ZR03 302 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 MBD3L2Q8NHZ7 208 aaPredicted RBP8.88□□□□□ -0.99
CDH3-203ENST00000542274 RTL8AQ9BWD3 113 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 SAP30LQ9HAJ7 183 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 LINC01548A6NM66 108 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 PSPNO60542 156 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 OXTP01178 125 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 IGKV1D-33P01593 117 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 IGKV1-33P01594 117 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 COX5AP20674 150 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 SRSF9Q13242 221 aaKnown RBP eCLIP8.88□□□□□ -0.99
CDH3-203ENST00000542274 C22orf34Q6ZV56 151 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 C3orf22Q8N5N4 141 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 OR51H1Q8NH63 302 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 METRNQ9UJH8 293 aa8.88□□□□□ -0.99
CDH3-203ENST00000542274 IGHV1-18A0A0C4DH31 117 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 IGHV1-24A0A0C4DH33 117 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A10PA6NDY2 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A18PA6NE21 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A16PA6NEW6 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A20PA6NIJ5 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A8PA6NJQ4 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A7PA6NKC0 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A22PA8MWA6 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A12PA8MX19 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A5PA8MXJ8 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A23PA8MXZ1 464 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 C16orf97H3BN30 126 aa8.87□□□□□ -0.99
CDH3-203ENST00000542274 FAM90A15PP0C7V4 464 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms