RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RPL36ALQ969Q0 106 aaKnown RBP11.33□□□□□ -0.6
USP3-204ENST00000540797 YPEL3P61236 119 aaPredicted RBP11.33□□□□□ -0.6
USP3-204ENST00000540797 FAM120AOSQ5T036 256 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 ATP5L2Q7Z4Y8 100 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.32□□□□□ -0.6
USP3-204ENST00000540797 HBDP02042 147 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 PLA2G5P39877 138 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 LYZL1Q6UWQ5 148 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 DERL1Q9BUN8 251 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 PRDM13Q9H4Q3 707 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 TRAV8-1A0A0A6YYK1 113 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 IGLV3-1P01715 115 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 DIAPH2-AS1Q14236 149 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 SERF1AO75920 110 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 ZNF134P52741 427 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 DEFB112Q30KQ8 113 aa11.32□□□□□ -0.6
USP3-204ENST00000540797 DNAL4O96015 105 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 TMEM249Q2WGJ8 235 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 ATRAIDQ6UW56 229 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 PARD6GQ9BYG4 376 aaPredicted RBP11.31□□□□□ -0.6
USP3-204ENST00000540797 CTSZQ9UBR2 303 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 LTBP2Q14767 1821 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 IGHV4-61A0A0C4DH41 118 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 GAGE10A6NGK3 116 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 GNB1LQ9BYB4 327 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 LINC00614P0C842 121 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 TTC9CQ8N5M4 171 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 HOXB4P17483 251 aaPredicted RBP11.31□□□□□ -0.6
USP3-204ENST00000540797 ERCC8Q13216 396 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 PDE6HQ13956 83 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 ZNF876PQ49A33 203 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 TMEM170AQ8WVE7 144 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 TPSG1Q9NRR2 321 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 ANAPC10Q9UM13 185 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 C2orf16Q68DN1 1984 aa11.31□□□□□ -0.6
USP3-204ENST00000540797 DEFB130BP0DP73 79 aa11.3□□□□□ -0.6
USP3-204ENST00000540797 DEFB130AP0DP74 79 aa11.3□□□□□ -0.6
USP3-204ENST00000540797 PTPRQQ9UMZ3 2332 aa11.3□□□□□ -0.6
USP3-204ENST00000540797 IGHV4-30-2A0A087WSY4 118 aa11.3□□□□□ -0.6
USP3-204ENST00000540797 MCRIP2Q9BUT9 160 aaKnown RBP11.3□□□□□ -0.6
USP3-204ENST00000540797 TDGF1P3P51864 188 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 SRSF4Q08170 494 aaKnown RBP11.29□□□□□ -0.6
USP3-204ENST00000540797 TCTEX1D4Q5JR98 221 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 XCL2Q9UBD3 114 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 SNAI2O43623 268 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 ELANEP08246 267 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 LINC01551Q86U37 167 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 VPREB3Q9UKI3 123 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 ABCA1O95477 2261 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 NDUFA4O00483 81 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 NCR2O95944 276 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 IGHV4-39P01824 125 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 IGHV4-59P01825 116 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 C11orf53Q8IXP5 236 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 DPH3P1Q9H4G8 78 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 RNF182Q8N6D2 247 aa11.29□□□□□ -0.6
USP3-204ENST00000540797 LYL1P12980 280 aa11.28□□□□□ -0.6
USP3-204ENST00000540797 SPOCK3Q9BQ16 436 aa11.28□□□□□ -0.6
USP3-204ENST00000540797 DENND4CQ5VZ89 1909 aa11.28□□□□□ -0.6
USP3-204ENST00000540797 A0A1B0GW64 132 aa11.28□□□□□ -0.6
USP3-204ENST00000540797 MST1LQ2TV78 715 aa11.28□□□□□ -0.6
USP3-204ENST00000540797 NRGNQ92686 78 aa11.28□□□□□ -0.6
USP3-204ENST00000540797 E9PQ18 207 aa11.27□□□□□ -0.6
USP3-204ENST00000540797 AMBPP02760 352 aa11.27□□□□□ -0.6
USP3-204ENST00000540797 SPRNQ5BIV9 151 aa11.27□□□□□ -0.6
USP3-204ENST00000540797 C14orf144Q96I85 54 aa11.27□□□□□ -0.6
USP3-204ENST00000540797 LIME1Q9H400 295 aa11.27□□□□□ -0.6
USP3-204ENST00000540797 WT1-ASQ06250 92 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 DAZAP2Q15038 168 aaPredicted RBP11.27□□□□□ -0.61
USP3-204ENST00000540797 C14orf178Q8N769 122 aaPredicted RBP11.27□□□□□ -0.61
USP3-204ENST00000540797 MED13LQ71F56 2210 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 IGKV1-39P01597 117 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 IGKV1D-39P04432 117 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 SMIM13P0DJ93 91 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 DDTP30046 118 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 SEM1Q6ZVN7 128 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 ST6GALNAC6Q969X2 333 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 CBY1Q9Y3M2 126 aa11.27□□□□□ -0.61
USP3-204ENST00000540797 TRBV7-9A0A0J9YWB2 115 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 LINC01549A6NIU2 74 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 D6R8Y8 96 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 LAGE3Q14657 143 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 C1orf194Q5T5A4 169 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 Q86TA4 180 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 CHTOPQ9Y3Y2 248 aaKnown RBP11.26□□□□□ -0.61
USP3-204ENST00000540797 DOCK10Q96BY6 2186 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 NIT1Q86X76 327 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 CREBBPQ92793 2442 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 DPM2O94777 84 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 LINC00469Q8N7U9 141 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 DEFB104AQ8WTQ1 72 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 LY96Q9Y6Y9 160 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 SPINK13Q1W4C9 94 aa11.26□□□□□ -0.61
USP3-204ENST00000540797 RBMY1BA6NDE4 496 aaKnown RBP11.25□□□□□ -0.61
USP3-204ENST00000540797 RBMY1EA6NEQ0 496 aaKnown RBP11.25□□□□□ -0.61
USP3-204ENST00000540797 RBMY1DP0C7P1 496 aaKnown RBP11.25□□□□□ -0.61
USP3-204ENST00000540797 RBMY1A1P0DJD3 496 aaKnown RBP11.25□□□□□ -0.61
USP3-204ENST00000540797 RBMY1CP0DJD4 496 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 MALRD1Q5VYJ5 2156 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 C10orf105Q8TEF2 133 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms