RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SLC25A21Q9BQT8 299 aaPredicted RBP9.43□□□□□ -0.9
SS18-204ENST00000539244 KRTAP1-5Q9BYS1 174 aa9.43□□□□□ -0.9
SS18-204ENST00000539244 Q9H3A6 140 aa9.43□□□□□ -0.9
SS18-204ENST00000539244 A0A1W2PPQ1 181 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 PMS2P5A8MQ11 134 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 H3BP45 60 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 H7BYZ3 331 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 LINC00869P0C866 280 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 CXCL2P19875 107 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 TMBIM6P55061 237 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 AP3S2P59780 193 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 ID3Q02535 119 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 PPP1R1AQ13522 171 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 S100A7AQ86SG5 101 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 RXFP4Q8TDU9 374 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 UHRF2Q96PU4 802 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 NOP10Q9NPE3 64 aaKnown RBP9.42□□□□□ -0.9
SS18-204ENST00000539244 PPP1R14DQ9NXH3 145 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 RNF24Q9Y225 148 aa9.42□□□□□ -0.9
SS18-204ENST00000539244 FNDC10F2Z333 226 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 H3BNG1 76 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 K7EPK0 472 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 HOXB5P09067 269 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 OR5G3P0C626 314 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 HTN1P15515 57 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 TOMM5Q8N4H5 51 aa9.41□□□□□ -0.9
SS18-204ENST00000539244 RPUSD4Q96CM3 377 aaKnown RBP9.41□□□□□ -0.9
SS18-204ENST00000539244 GNPNAT1Q96EK6 184 aaPredicted RBP9.41□□□□□ -0.9
SS18-204ENST00000539244 TRAV26-1A0A087WT03 109 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 SMCO3A2RU48 225 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 ADAP1O75689 374 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 M6PRP20645 277 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 KRTAP10-2P60368 255 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 DLK1P80370 383 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 C4orf46Q504U0 113 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 LCN15Q6UWW0 184 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 PATE2Q6UY27 113 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 LRRC20Q8TCA0 184 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 SLC50A1Q9BRV3 221 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 SCRT2Q9NQ03 307 aa9.4□□□□□ -0.9
SS18-204ENST00000539244 ZNF331Q9NQX6 463 aaPredicted RBP9.4□□□□□ -0.9
SS18-204ENST00000539244 ZNF701M0R085 212 aaPredicted RBP9.39□□□□□ -0.91
SS18-204ENST00000539244 UBE2MP61081 183 aaKnown RBP9.39□□□□□ -0.91
SS18-204ENST00000539244 POLR2GP62487 172 aaKnown RBP eCLIP9.39□□□□□ -0.91
SS18-204ENST00000539244 OR5I1Q13606 314 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 PXDC1Q5TGL8 231 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 SMIM8Q96KF7 97 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 ARL6Q9H0F7 186 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 ARV1Q9H2C2 271 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 NPVFQ9HCQ7 196 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 PSENENQ9NZ42 101 aa9.39□□□□□ -0.91
SS18-204ENST00000539244 MRPS16Q9Y3D3 137 aaKnown RBP9.39□□□□□ -0.91
SS18-204ENST00000539244 HOXA5P20719 270 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 KIR3DS1Q14943 382 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 ESRGQ1W209 222 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 GFI1BQ5VTD9 330 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 TMEM14EPQ6UXP3 125 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 MCFD2Q8NI22 146 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 V9GYH0 126 aa9.38□□□□□ -0.91
SS18-204ENST00000539244 H3BMQ9 156 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 CCNKO75909 580 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 RLN2P04090 185 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 PYDC2Q56P42 97 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 TEPPQ6URK8 271 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 CCDC190Q86UF4 302 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 CCDC28AQ8IWP9 274 aa9.37□□□□□ -0.91
SS18-204ENST00000539244 A0A0J9YY99 117 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 C9orf170A2RU37 121 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 SSSCA1O60232 199 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 PRB4P10163 310 aaPredicted RBP9.36□□□□□ -0.91
SS18-204ENST00000539244 ANXA7P20073 488 aaKnown RBP9.36□□□□□ -0.91
SS18-204ENST00000539244 RRAS2P62070 204 aaPredicted RBP9.36□□□□□ -0.91
SS18-204ENST00000539244 SLC38A11Q08AI6 406 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 LINC00305Q7Z4B0 112 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 ZNF546Q86UE3 836 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 BPIFA4PQ86YQ2 179 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 ZBTB8BQ8NAP8 495 aaPredicted RBP9.36□□□□□ -0.91
SS18-204ENST00000539244 OR10P1Q8NGE3 313 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 ODF3Q96PU9 254 aa9.36□□□□□ -0.91
SS18-204ENST00000539244 GAGE12BA1L429 117 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 SNURFLB1AK76 121 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 PRAC2D3DTV9 90 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 GAGE7O76087 117 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 METTL15P1P0C7V9 234 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 GAGE12FP0CL80 117 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 GAGE12GP0CL81 117 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 GAGE12IP0CL82 117 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 IGLC2P0DOY2 106 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 TAS2R30P59541 319 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 DAZ2Q13117 558 aaKnown RBP9.35□□□□□ -0.91
SS18-204ENST00000539244 Q6ZRN7 208 aaPredicted RBP9.35□□□□□ -0.91
SS18-204ENST00000539244 C18orf15Q96N68 181 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 PARD6GQ9BYG4 376 aaPredicted RBP9.35□□□□□ -0.91
SS18-204ENST00000539244 ZNF586Q9NXT0 402 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 MGAT4CQ9UBM8 478 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 PXMP4Q9Y6I8 212 aa9.35□□□□□ -0.91
SS18-204ENST00000539244 SLC17A3O00476 420 aa9.34□□□□□ -0.91
SS18-204ENST00000539244 GOSR2O14653 212 aa9.34□□□□□ -0.91
SS18-204ENST00000539244 AGPAT2O15120 278 aa9.34□□□□□ -0.91
SS18-204ENST00000539244 TSC22D2O75157 780 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms