RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 Q6ZN92 141 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 IGF2BP2-AS1Q96M15 143 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 SMIM27A0A1W2PRY6 76 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 AMY1AP04745 511 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 S100A7AQ86SG5 101 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 STXBP6Q8NFX7 210 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 TRGV9Q99603 122 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 MRPL32Q9BYC8 188 aaKnown RBP8.47□□□□□ -1.05
CLIP1-210ENST00000538120 TMEM167BQ9NRX6 74 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 TNFRSF19Q9NS68 423 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 ZFP30Q9Y2G7 519 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 CORTO00230 105 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 ISLRO14498 428 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 CNIH1O95406 144 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 MT-ND6P03923 174 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 UBE2E1P51965 193 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 TIRAPP58753 221 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 HES1Q14469 280 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 GDF5OSQ5U4N7 250 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 CCDC144NLQ6NUI1 221 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 ASH1LQ9NR48 2969 aaKnown RBP8.47□□□□□ -1.05
CLIP1-210ENST00000538120 ARL2-SNX15V9GYD0 113 aa8.47□□□□□ -1.05
CLIP1-210ENST00000538120 USP24Q9UPU5 2620 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 COX7A2P2O60397 106 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 BRI3O95415 125 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 APCSP02743 223 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 TAS2R45P59539 299 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 C10orf113Q5VZT2 155 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 OR1L4Q8NGR5 311 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 C18orf32Q8TCD1 76 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 GEMIN7Q9H840 131 aaKnown RBP8.46□□□□□ -1.05
CLIP1-210ENST00000538120 ZNF355PQ9NSJ1 428 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 UQCR10Q9UDW1 63 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 SMPXQ9UHP9 88 aa8.46□□□□□ -1.05
CLIP1-210ENST00000538120 TRAV25A0A0B4J276 109 aa8.46□□□□□ -1.06
CLIP1-210ENST00000538120 PYYP10082 97 aa8.46□□□□□ -1.06
CLIP1-210ENST00000538120 FAM120AOSQ5T036 256 aa8.46□□□□□ -1.06
CLIP1-210ENST00000538120 CCL19Q99731 98 aa8.46□□□□□ -1.06
CLIP1-210ENST00000538120 SSBP4Q9BWG4 385 aaPredicted RBP8.46□□□□□ -1.06
CLIP1-210ENST00000538120 TP73-AS1Q9UF72 201 aa8.46□□□□□ -1.06
CLIP1-210ENST00000538120 LAMTOR2Q9Y2Q5 125 aa8.46□□□□□ -1.06
CLIP1-210ENST00000538120 K7EIM0 57 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 HLA-DQA1P01909 254 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 HNRNPA3P51991 378 aaKnown RBP8.45□□□□□ -1.06
CLIP1-210ENST00000538120 NDPQ00604 133 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 SGK494Q96LW2 274 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 TNFRSF18Q9Y5U5 241 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 IGHV4-61A0A0C4DH41 118 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 IZUMO1RA6ND01 250 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 VWC2LB2RUY7 222 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 IGLC1P0CG04 106 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 HINT1P49773 126 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-210ENST00000538120 PRR27Q6MZM9 219 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 ZNF562Q6V9R5 426 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 C10orf105Q8TEF2 133 aa8.45□□□□□ -1.06
CLIP1-210ENST00000538120 COL12A1Q99715 3063 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 SAA4P35542 130 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 KLF17Q5JT82 389 aaPredicted RBP8.44□□□□□ -1.06
CLIP1-210ENST00000538120 EBLN2Q6P2I7 272 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 ERASQ7Z444 233 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 LINC00305Q7Z4B0 112 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 FAM110AQ9BQ89 295 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 ZNF331Q9NQX6 463 aaPredicted RBP8.44□□□□□ -1.06
CLIP1-210ENST00000538120 FLNCQ14315 2725 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 DOPEY1Q5JWR5 2465 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 SVEP1Q4LDE5 3571 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 AKAP6Q13023 2319 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 A0A1W2PRE2 83 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 NCBP2LA6PVI3 153 aaKnown RBP8.44□□□□□ -1.06
CLIP1-210ENST00000538120 CCL25O15444 150 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 EGR2P11161 476 aaPredicted RBP8.44□□□□□ -1.06
CLIP1-210ENST00000538120 ORM2P19652 201 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 PLP1P60201 277 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 UBE2L3P68036 154 aaKnown RBP8.44□□□□□ -1.06
CLIP1-210ENST00000538120 PAX8Q06710 450 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 Q56UQ5 140 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 UNQ5815/PRO19632Q6UWF5 114 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 SPATA12Q7Z6I5 190 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 NUP35Q8NFH5 326 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 OR1B1Q8NGR6 318 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 BORCS7Q96B45 105 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 FXYD5Q96DB9 178 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 MED13LQ71F56 2210 aa8.44□□□□□ -1.06
CLIP1-210ENST00000538120 VPS13CQ709C8 3753 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 CENPVL3A0A0U1RRI6 287 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 RPL19P84098 196 aaKnown RBP8.43□□□□□ -1.06
CLIP1-210ENST00000538120 SRSF1Q07955 248 aaKnown RBP eCLIP8.43□□□□□ -1.06
CLIP1-210ENST00000538120 Q8N9W7 124 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 ARPC1AQ92747 370 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 FANCD2OSQ96PS1 177 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 PAXXQ9BUH6 204 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 USP9XQ93008 2570 aaPredicted RBP8.43□□□□□ -1.06
CLIP1-210ENST00000538120 NPFFO15130 113 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 IGKV1-17P01599 117 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 TSPOP30536 169 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 CAMPP49913 170 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 GNG5P63218 68 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 PMCHL1Q16048 86 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 ZNF843Q8N446 348 aa8.43□□□□□ -1.06
CLIP1-210ENST00000538120 TTC9CQ8N5M4 171 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms