RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 Q8TCH9 128 aa11.19□□□□□ -0.62
LIG1-203ENST00000536218 CNIH1O95406 144 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 PLAUP00749 431 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 HERV-K104P63124 156 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 GTSF1Q8WW33 167 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 TTTY13Q9BZ97 58 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 TNCP24821 2201 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 CCL3L1P16619 93 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 A0A1B0GWB2 263 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 A0A1W2PRD5 423 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 A0A1W2PRF3 423 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 A0A1W2PRM7 423 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 F8W1H4 67 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 P01737 135 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 CT45A6P0DMU7 189 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 CT45A5P0DMU8 189 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 CT45A7P0DMV0 189 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 CGB3P0DN86 165 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 CGB7P0DN87 165 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 MLANAQ16655 118 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 WFDC3Q8IUB2 231 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 DAZAP1Q96EP5 407 aaKnown RBP11.18□□□□□ -0.62
LIG1-203ENST00000536218 RPP21Q9H633 154 aaKnown RBP11.18□□□□□ -0.62
LIG1-203ENST00000536218 LRBAP50851 2863 aa11.18□□□□□ -0.62
LIG1-203ENST00000536218 B5MCH6 92 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 E7EQL1 145 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 FAM106CPP0CH98 169 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 FAM106AQ4KMX7 169 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 SYT8Q8NBV8 401 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 ZNF418Q8TF45 676 aaPredicted RBP11.17□□□□□ -0.62
LIG1-203ENST00000536218 TMEM140Q9NV12 185 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 CR1LQ2VPA4 569 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 LYPD2Q6UXB3 125 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 C8orf86Q6ZUL3 223 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 RALYQ9UKM9 306 aaKnown RBP11.17□□□□□ -0.62
LIG1-203ENST00000536218 RAI1Q7Z5J4 1906 aaPredicted RBP11.17□□□□□ -0.62
LIG1-203ENST00000536218 AKAP6Q13023 2319 aa11.17□□□□□ -0.62
LIG1-203ENST00000536218 VSTM5A8MXK1 200 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 FNDC10F2Z333 226 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 LYNX1G3V0Z9 82 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 TSPAN13O95857 204 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 MT-ATP8P03928 68 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 LYNX1P0DP58 116 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 LINC00322Q6ZN03 302 aaPredicted RBP11.16□□□□□ -0.62
LIG1-203ENST00000536218 OR9G1Q8NH87 305 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 CCL21O00585 134 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 RNASE6Q93091 150 aaKnown RBP11.16□□□□□ -0.62
LIG1-203ENST00000536218 SLC25A33Q9BSK2 321 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 TPPP3Q9BW30 176 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 PGPEP1Q9NXJ5 209 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.16□□□□□ -0.62
LIG1-203ENST00000536218 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 VKORC1Q9BQB6 163 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 ANAPC13Q9BS18 74 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 NDFIP1Q9BT67 221 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 NGBQ9NPG2 151 aa11.16□□□□□ -0.62
LIG1-203ENST00000536218 IGKV1OR2-108A0A075B7D4 117 aa11.15□□□□□ -0.62
LIG1-203ENST00000536218 SLC25A5P05141 298 aaKnown RBP11.15□□□□□ -0.62
LIG1-203ENST00000536218 PRB3Q04118 309 aaPredicted RBP11.15□□□□□ -0.62
LIG1-203ENST00000536218 LOXL1Q08397 574 aaPredicted RBP11.15□□□□□ -0.62
LIG1-203ENST00000536218 hADV38S2A0JD32 116 aa11.15□□□□□ -0.62
LIG1-203ENST00000536218 SHISA9B4DS77 424 aa11.15□□□□□ -0.62
LIG1-203ENST00000536218 APOMO95445 188 aa11.15□□□□□ -0.62
LIG1-203ENST00000536218 LTAP01374 205 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 RBPMS2Q6ZRY4 209 aaKnown RBP11.14□□□□□ -0.63
LIG1-203ENST00000536218 ZNF329Q86UD4 541 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 PIP4P2Q8N4L2 257 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 CYSLTR1Q9Y271 337 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 MED13LQ71F56 2210 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 DSCAML1Q8TD84 2053 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 TMEM178BH3BS89 294 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 TEX36Q5VZQ5 186 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 PAXXQ9BUH6 204 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 MALRD1Q5VYJ5 2156 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 FCN3O75636 299 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 IFI27P40305 119 aaPredicted RBP11.14□□□□□ -0.63
LIG1-203ENST00000536218 ANXA2RQ3ZCQ2 193 aa11.14□□□□□ -0.63
LIG1-203ENST00000536218 MAP1AP78559 2803 aaPredicted RBP11.14□□□□□ -0.63
LIG1-203ENST00000536218 OR11H12B2RN74 326 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 IGKV1-16P04430 117 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 CD3EP07766 207 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 DLX1P56177 255 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 CDSNQ15517 529 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 OR11H1Q8NG94 326 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 OR11H2Q8NH07 326 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 ZNF414Q96IQ9 312 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 SLC25A2Q9BXI2 301 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 RAB9BQ9NP90 201 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 H3BTX0 84 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 SIVA1O15304 175 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 TACC2O95359 2948 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 FCER1GP30273 86 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 TMEM200BQ69YZ2 307 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 RPUSD1Q9UJJ7 312 aaKnown RBP11.13□□□□□ -0.63
LIG1-203ENST00000536218 UFC1Q9Y3C8 167 aa11.13□□□□□ -0.63
LIG1-203ENST00000536218 MOSP00540 346 aa11.12□□□□□ -0.63
LIG1-203ENST00000536218 SMIM20Q8N5G0 67 aa11.12□□□□□ -0.63
LIG1-203ENST00000536218 TANC2Q9HCD6 1990 aa11.12□□□□□ -0.63
LIG1-203ENST00000536218 NDUFB3O43676 98 aa11.12□□□□□ -0.63
LIG1-203ENST00000536218 IGHV3-48P01763 117 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms