RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, human

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-210	ENST00000534172	GOLT1A	Q6ZVE7	132 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	NPW	Q8N729	165 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	APCDD1L	Q8NCL9	501 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	NT5C	Q8TCD5	201 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	BORCS7	Q96B45	105 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	KCNS1	Q96KK3	526 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	TAAR3P	Q9P1P4	343 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	SCN1A	P35498	2009 aa		2.58	□□□□□ -2
CSMD3-210	ENST00000534172	SPG11	Q96JI7	2443 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	MUC22	E2RYF6	1773 aa	Predicted RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	TRAV8-4	A0A0B4J246	113 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	TRAV5	A0A0B4J249	113 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172		A6NIN4	97 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	ZNF736	B4DX44	427 aa	Predicted RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	GGTLC3	B5MD39	225 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	LINC01619	G3V211	115 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	HCRT	O43612	131 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	PITX3	O75364	302 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	SRSF10	O75494	262 aa	Known RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	KLF7	O75840	302 aa	Predicted RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	SERF1A	O75920	110 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172		P01737	135 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	CRISP2	P16562	243 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	PFN3	P60673	137 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172		Q1RN00	199 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	ZNF678	Q5SXM1	525 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	LCN12	Q6JVE5	192 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	ZNF322	Q6U7Q0	402 aa	Predicted RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	BAGE3	Q86Y29	109 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	BAGE2	Q86Y30	109 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	NKAPP1	Q8N9T2	125 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	OR5D14	Q8NGL3	314 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	MRPL30	Q8TCC3	161 aa	Known RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	C2orf15	Q8WU43	125 aa	Known RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	FAM3D	Q96BQ1	224 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	FAM19A4	Q96LR4	140 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	PLEKHF2	Q9H8W4	249 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	EDA2R	Q9HAV5	297 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	CMC2	Q9NRP2	79 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	TVP23B	Q9NYZ1	205 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	KCNE3	Q9Y6H6	103 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	SPTAN1	Q13813	2472 aa	Known RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	SETD2	Q9BYW2	2564 aa	Predicted RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	LOC107984640	A0A0U1RRK4	108 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	C5orf49	A4QMS7	147 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172		J3QT63	122 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	SNCG	O76070	127 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	APOM	O95445	188 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	IGLC6	P0CF74	106 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	MDK	P21741	143 aa	Predicted RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	ASIP	P42127	132 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	RPS21	P63220	83 aa	Known RBP	2.57	□□□□□ -2
CSMD3-210	ENST00000534172	LAMTOR4	Q0VGL1	99 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	CYP2G1P	Q6ZSU1	146 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	FAM231D	Q6ZW35	169 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	OR11H6	Q8NGC7	330 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	TMEM191A	Q9H0A3	160 aa		2.57	□□□□□ -2
CSMD3-210	ENST00000534172	TRAV1-1	A0A0B4J248	108 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	EEF1E1-BLOC1S5	C9J1V9	151 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172		H3BMG7	143 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	SYS1-DBNDD2	H3BUS1	97 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172		M0R129	80 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	NUPR1	O60356	82 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	ZNF737	O75373	536 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	MT-ND6	P03923	174 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	SLC25A5	P05141	298 aa	Known RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	MRPL3	P09001	348 aa	Known RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	C3orf79	P0CE67	100 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	SNRPF	P62306	86 aa	Known RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	REG3A	Q06141	175 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	CEACAM16	Q2WEN9	425 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	LCE1F	Q5T754	118 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	KLHL30-AS1	Q8NEE0	82 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	OR51H1	Q8NH63	302 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	CLDND2	Q8NHS1	167 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	SGMS2	Q8NHU3	365 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	CT55	Q8WUE5	264 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	PLEKHB2	Q96CS7	222 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	AMELY	Q99218	206 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	TMEM70	Q9BUB7	260 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	ULBP3	Q9BZM4	244 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	ZNF702P	Q9H963	129 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	ZNF324	O75467	553 aa	Predicted RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	NCR2	O95944	276 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	NAPSA	O96009	420 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	IGHV3-23	P01764	117 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	PPP1CC	P36873	323 aa	Known RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	RPS24	P62847	133 aa	Known RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	FKBP1A	P62942	108 aa	Known RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	IHH	Q14623	411 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	MORN3	Q6PF18	240 aa	Predicted RBP	2.56	□□□□□ -2
CSMD3-210	ENST00000534172	RFLNA	Q6ZTI6	216 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	LINC00173	Q6ZV60	143 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	SPATA12	Q7Z6I5	190 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	BPIFA4P	Q86YQ2	179 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	MSRB3	Q8IXL7	192 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	ATOH7	Q8N100	152 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	OR4X2	Q8NGF9	303 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	FAM213B	Q8TBF2	198 aa		2.56	□□□□□ -2
CSMD3-210	ENST00000534172	STAG3L4	Q8TBR4	150 aa		2.56	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms