RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RNF125Q96EQ8 232 aa15.18■□□□□ 0.02
VPS28-213ENST00000530983 hDV102S1A0JD36 115 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 MRPS12O15235 138 aaKnown RBP15.17■□□□□ 0.02
VPS28-213ENST00000530983 HLA-DRB1P01911 266 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 PPBPP02775 128 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 ZNF672Q499Z4 452 aaPredicted RBP15.17■□□□□ 0.02
VPS28-213ENST00000530983 LY6G5BQ8NDX9 201 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 IGFBPL1Q8WX77 278 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 ST20Q9HBF5 79 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 NUDT3O95989 172 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 IL4P05112 153 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 ARMS2P0C7Q2 107 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 PSG8Q9UQ74 426 aa15.17■□□□□ 0.02
VPS28-213ENST00000530983 MUC6Q6W4X9 2439 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 A0A1B0GUT8 65 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 NBR2O15453 112 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 LIPFP07098 398 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 KLF17Q5JT82 389 aaPredicted RBP15.16■□□□□ 0.02
VPS28-213ENST00000530983 BVES-AS1Q5T3Y7 98 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 CFHR4Q92496 578 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 HILPDAQ9Y5L2 63 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 GRNP28799 593 aaKnown RBP15.16■□□□□ 0.02
VPS28-213ENST00000530983 CRIP1P50238 77 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 PSG3Q16557 428 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 LYPD1Q8N2G4 141 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 TMEM190Q8WZ59 177 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 ZNF414Q96IQ9 312 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 S4R3C0 116 aa15.16■□□□□ 0.02
VPS28-213ENST00000530983 ANKHD1Q8IWZ3 2542 aaKnown RBP15.16■□□□□ 0.02
VPS28-213ENST00000530983 OR2T8A6NH00 312 aa15.15■□□□□ 0.02
VPS28-213ENST00000530983 K7ENP7 123 aa15.15■□□□□ 0.02
VPS28-213ENST00000530983 HTR1DP28221 377 aa15.15■□□□□ 0.02
VPS28-213ENST00000530983 BCL6BQ8N143 479 aaPredicted RBP15.15■□□□□ 0.02
VPS28-213ENST00000530983 CST9LQ9H4G1 147 aa15.15■□□□□ 0.02
VPS28-213ENST00000530983 WI2-2373I1.2A0A1W2PRP0 233 aa15.15■□□□□ 0.02
VPS28-213ENST00000530983 ABCA4P78363 2273 aa15.15■□□□□ 0.02
VPS28-213ENST00000530983 MUC21A0A0G2JKD1 596 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 MUC21A0A140T8X8 626 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 M0R3E3 92 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 LY6HO94772 140 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 NDUFA3O95167 84 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 OR5AL1P0C617 328 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 FCGR2BP31994 310 aaPredicted RBP15.14■□□□□ 0.01
VPS28-213ENST00000530983 FOXC1Q12948 553 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 MUC21Q5SSG8 566 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 TMUB1Q9BVT8 246 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 DPM3Q9P2X0 92 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 K7EQM0 130 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 ARF6P62330 175 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 OCIAD2Q56VL3 154 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 DEFB125Q8N687 156 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 GATD1Q8NB37 220 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 NPBQ8NG41 125 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 OR11H6Q8NGC7 330 aa15.14■□□□□ 0.01
VPS28-213ENST00000530983 CSN3P07498 182 aa15.13■□□□□ 0.01
VPS28-213ENST00000530983 NEU4Q8WWR8 484 aaPredicted RBP15.13■□□□□ 0.01
VPS28-213ENST00000530983 CEP295Q9C0D2 2601 aa15.13■□□□□ 0.01
VPS28-213ENST00000530983 CBY3A6NI87 242 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 FAM90A27PA6NNH2 459 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 KLRD1Q13241 179 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 RIGQ13278 110 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 SLC25A34Q6PIV7 304 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 AMMECR1LQ6DCA0 310 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 VPS25Q9BRG1 176 aa15.12■□□□□ 0.01
VPS28-213ENST00000530983 C8orf49Q96NF6 230 aa15.11■□□□□ 0.01
VPS28-213ENST00000530983 FANCD2OSQ96PS1 177 aa15.11■□□□□ 0.01
VPS28-213ENST00000530983 MCRIP2Q9BUT9 160 aaKnown RBP15.11■□□□□ 0.01
VPS28-213ENST00000530983 MAP1LC3CQ9BXW4 147 aa15.11■□□□□ 0.01
VPS28-213ENST00000530983 TMEM191AQ9H0A3 160 aa15.11■□□□□ 0.01
VPS28-213ENST00000530983 GNG7O60262 68 aa15.11■□□□□ 0.01
VPS28-213ENST00000530983 RAB1BQ9H0U4 201 aa15.11■□□□□ 0.01
VPS28-213ENST00000530983 IGLV11-55A0A075B6I3 123 aa15.1■□□□□ 0.01
VPS28-213ENST00000530983 F8W735 103 aaPredicted RBP15.1■□□□□ 0.01
VPS28-213ENST00000530983 PET117Q6UWS5 81 aa15.1■□□□□ 0.01
VPS28-213ENST00000530983 SCRT2Q9NQ03 307 aa15.1■□□□□ 0.01
VPS28-213ENST00000530983 C5orf64Q2M2E5 130 aa15.1■□□□□ 0.01
VPS28-213ENST00000530983 TPPP3Q9BW30 176 aa15.1■□□□□ 0.01
VPS28-213ENST00000530983 PTPRZ1P23471 2315 aaPredicted RBP15.09■□□□□ 0.01
VPS28-213ENST00000530983 HRNRQ86YZ3 2850 aaPredicted RBP15.09■□□□□ 0.01
VPS28-213ENST00000530983 A0A1B0GW15 77 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 ODF3BA8MYP8 253 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 CEACAM3P40198 252 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 PDE6HQ13956 83 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 HES1Q14469 280 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 Q6AWC8 147 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 AP5S1Q9NUS5 200 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 HSPB8Q9UJY1 196 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 FBXL19-AS1Q494R0 122 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 C12orf54Q6X4T0 127 aa15.09■□□□□ 0.01
VPS28-213ENST00000530983 PTPRQQ9UMZ3 2332 aa15.08■□□□□ 0.01
VPS28-213ENST00000530983 A0A1W2PRD5 423 aa15.08■□□□□ 0
VPS28-213ENST00000530983 A0A1W2PRF3 423 aa15.08■□□□□ 0
VPS28-213ENST00000530983 A0A1W2PRM7 423 aa15.08■□□□□ 0
VPS28-213ENST00000530983 NPIPB5A8MRT5 1133 aa15.08■□□□□ 0
VPS28-213ENST00000530983 H0Y8G0 127 aa15.08■□□□□ 0
VPS28-213ENST00000530983 NDPQ00604 133 aa15.08■□□□□ 0
VPS28-213ENST00000530983 PSG9Q00887 426 aa15.08■□□□□ 0
VPS28-213ENST00000530983 ZNF48Q96MX3 618 aaPredicted RBP15.08■□□□□ 0
VPS28-213ENST00000530983 MFAP4P55083 255 aa15.08■□□□□ 0
VPS28-213ENST00000530983 AAMDCQ9H7C9 122 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms