RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 AVPP01185 164 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 IER3P46695 156 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 S100A12P80511 92 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 LY6EQ16553 131 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 SAPCD1Q5SSQ6 148 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 C17orf77Q96MU5 243 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 SLC50A1Q9BRV3 221 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 GPR61Q9BZJ8 451 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 GNB4Q9HAV0 340 aa11.45□□□□□ -0.58
ECHDC1-220ENST00000528402 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.45□□□□□ -0.585e-8■■■■■ 27.8
ECHDC1-220ENST00000528402 TMEM89A2RUT3 159 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 SH2D7A6NKC9 451 aaPredicted RBP11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 SNURFLB1AK76 121 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 NPIPB6E9PJ23 425 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 PRR27Q6MZM9 219 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 COX8CQ7Z4L0 72 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 PRNTQ86SH4 94 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 TEX29Q8N6K0 151 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 U3KQE9 123 aa11.44□□□□□ -0.58
ECHDC1-220ENST00000528402 IFITM10A6NMD0 228 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 ZNF785A8K8V0 405 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 TPPP2P59282 170 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 TMEM136Q6ZRR5 245 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 GBGT1Q8N5D6 347 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 TMEM18Q96B42 140 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 NDUFA4O00483 81 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 IGHV4-31P0DP07 118 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 CBLN1P23435 193 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 COL8A1P27658 744 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 ARL3P36405 182 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 Q0VG73 95 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 GFI1BQ5VTD9 330 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 BCL6BQ8N143 479 aaPredicted RBP11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 NUP35Q8NFH5 326 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 MRPL53Q96EL3 112 aaKnown RBP11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 SMAD5-AS1Q9Y6J3 95 aa11.43□□□□□ -0.58
ECHDC1-220ENST00000528402 ZNF462Q96JM2 2506 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 SPG11Q96JI7 2443 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 RBAKDNA6NC62 111 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 FSHBP01225 129 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 IGLV1-40P01703 118 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 CT45A10P0DMU9 189 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 CRISP2P16562 243 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 FOXA3P55318 350 aaPredicted RBP11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 DEFB112Q30KQ8 113 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 C16orf54Q6UWD8 224 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 CIARTQ8N365 385 aaPredicted RBP11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 OR10D4PQ8NGN7 298 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 SGK494Q96LW2 274 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 NEU1Q99519 415 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 HIST1H2BLQ99880 126 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 MYO18BQ8IUG5 2567 aa11.42□□□□□ -0.58
ECHDC1-220ENST00000528402 CLPSL1A2RUU4 121 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 HIGD1CA8MV81 97 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 RNF223E7ERA6 249 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 TACC2O95359 2948 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 ESDP10768 282 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 FABP4P15090 132 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 TCL1AP56279 114 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 OR10J3Q5JRS4 329 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 Q5PR19 223 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 Q6AWC8 147 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 CYB5R2Q6BCY4 276 aa11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 RBPMS2Q6ZRY4 209 aaKnown RBP11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 PACRGQ96M98 296 aaPredicted RBP11.41□□□□□ -0.58
ECHDC1-220ENST00000528402 TRAV8-1A0A0A6YYK1 113 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 A0A1W2PS18 150 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 APCSP02743 223 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 RAB4BP61018 213 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 BLCAPP62952 87 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 PAFAH1B2P68402 229 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 PRDM13Q9H4Q3 707 aa11.4□□□□□ -0.58
ECHDC1-220ENST00000528402 FLNCQ14315 2725 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 A0A1B0GW15 77 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 CHEK1O14757 476 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 CA1P00915 261 aaPredicted RBP11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 PF4V1P10720 104 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 BMI1P35226 326 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 CFHR3Q02985 330 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 MRPL54Q6P161 138 aaKnown RBP11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 Q6YL49 198 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 LINC00322Q6ZN03 302 aaPredicted RBP11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 NDFIP1Q9BT67 221 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 NIT2Q9NQR4 276 aa11.39□□□□□ -0.59
ECHDC1-220ENST00000528402 M0R3E3 92 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 AMBPP02760 352 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 KRTAP10-9P60411 292 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 RPS20P60866 119 aaKnown RBP11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 HBBP68871 147 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 SRSF2Q01130 221 aaKnown RBP11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 PDZD11Q5EBL8 140 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 LCN12Q6JVE5 192 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 OR2D3Q8NGH3 330 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 LINC00527Q9UJ94 153 aa11.38□□□□□ -0.59
ECHDC1-220ENST00000528402 IGHV3-35A0A0C4DH35 117 aa11.37□□□□□ -0.59
ECHDC1-220ENST00000528402 A0A1B0GXF2 115 aa11.37□□□□□ -0.59
ECHDC1-220ENST00000528402 A8MWP6 167 aa11.37□□□□□ -0.59
ECHDC1-220ENST00000528402 SPINK4O60575 86 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms