RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 DCANP1Q8TF63 244 aa11.46□□□□□ -0.57
LSM1-203ENST00000520755 RNF141Q8WVD5 230 aa11.46□□□□□ -0.57
LSM1-203ENST00000520755 SPAG8Q99932 426 aaPredicted RBP11.46□□□□□ -0.57
LSM1-203ENST00000520755 PAXXQ9BUH6 204 aa11.46□□□□□ -0.57
LSM1-203ENST00000520755 OR51M1Q9H341 326 aa11.46□□□□□ -0.57
LSM1-203ENST00000520755 ZNF705EA8MWA4 302 aaPredicted RBP11.45□□□□□ -0.58
LSM1-203ENST00000520755 IFNA7P01567 189 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 CD5P06127 495 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 GCHFRP30047 84 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 CD81P60033 236 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 UBE2L3P68036 154 aaKnown RBP11.45□□□□□ -0.58
LSM1-203ENST00000520755 PQLC2Q6ZP29 291 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 FAM24BQ8N5W8 94 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 STXBP6Q8NFX7 210 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 MRAPQ8TCY5 172 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 PCNPQ8WW12 178 aaKnown RBP11.45□□□□□ -0.58
LSM1-203ENST00000520755 MS4A6AQ9H2W1 248 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 TMPRSS5Q9H3S3 457 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 UBQLN2Q9UHD9 624 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 RNF24Q9Y225 148 aa11.45□□□□□ -0.58
LSM1-203ENST00000520755 A0A1B0GV50 99 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 NDUFB4O95168 129 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 CXorf1O96002 111 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 H2AFB1P0C5Y9 115 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 HIST1H1EP10412 219 aaKnown RBP11.44□□□□□ -0.58
LSM1-203ENST00000520755 ATF4P18848 351 aaPredicted RBP11.44□□□□□ -0.58
LSM1-203ENST00000520755 WFDC3Q8IUB2 231 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 SUN5Q8TC36 379 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 SFT2D1Q8WV19 159 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 SAT2Q96F10 170 aaPredicted RBP11.44□□□□□ -0.58
LSM1-203ENST00000520755 HRH4Q9H3N8 390 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 NRN1Q9NPD7 142 aa11.44□□□□□ -0.58
LSM1-203ENST00000520755 TRBV19A0A075B6N1 114 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 TRAV8-2A0A0B4J237 113 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 OR4C46A6NHA9 309 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 K7EQG2 157 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 DNASE2O00115 360 aaPredicted RBP11.43□□□□□ -0.58
LSM1-203ENST00000520755 NMBP08949 121 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 CD7P09564 240 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 PAFAH1B2P68402 229 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 CCL20P78556 96 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 DEFB121Q5J5C9 76 aa11.43□□□□□ -0.58
LSM1-203ENST00000520755 MEGF8Q7Z7M0 2845 aa11.42□□□□□ -0.58
LSM1-203ENST00000520755 TRAV1-1A0A0B4J248 108 aa11.42□□□□□ -0.58
LSM1-203ENST00000520755 Q8N1Y9 231 aa11.42□□□□□ -0.58
LSM1-203ENST00000520755 LYPD6BQ8NI32 183 aa11.42□□□□□ -0.58
LSM1-203ENST00000520755 BLNKQ8WV28 456 aa11.42□□□□□ -0.58
LSM1-203ENST00000520755 TRAV2A0A0B4J234 112 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 NBEAP1P0C6P0 100 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 HLA-DMBP28068 263 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 IGFL4Q6B9Z1 124 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 ZNF767PQ75MW2 155 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 C20orf173Q96LM9 149 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 WFDC10AQ9H1F0 79 aa11.41□□□□□ -0.58
LSM1-203ENST00000520755 ZNF331Q9NQX6 463 aaPredicted RBP11.41□□□□□ -0.58
LSM1-203ENST00000520755 AGRNO00468 2067 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 RGS13O14921 159 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 ZNF253O75346 499 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 MEOX2P50222 304 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 BLOC1S1P78537 153 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 PDE6HQ13956 83 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 GUK1Q16774 197 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 ODF3L2Q3SX64 289 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 IQCF2Q8IXL9 164 aa11.4□□□□□ -0.58
LSM1-203ENST00000520755 OR11H12B2RN74 326 aa11.39□□□□□ -0.59
LSM1-203ENST00000520755 DEFB125Q8N687 156 aa11.39□□□□□ -0.59
LSM1-203ENST00000520755 RNF182Q8N6D2 247 aa11.39□□□□□ -0.59
LSM1-203ENST00000520755 LRRC20Q8TCA0 184 aa11.39□□□□□ -0.59
LSM1-203ENST00000520755 SLC50A1Q9BRV3 221 aa11.39□□□□□ -0.59
LSM1-203ENST00000520755 TMEM167BQ9NRX6 74 aa11.39□□□□□ -0.59
LSM1-203ENST00000520755 YTHDF2Q9Y5A9 579 aaKnown RBP11.39□□□□□ -0.59
LSM1-203ENST00000520755 GGTLC3B5MD39 225 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 ISLRO14498 428 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 HBE1P02100 147 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 ZNF688P0C7X2 276 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 PRB4P10163 310 aaPredicted RBP11.38□□□□□ -0.59
LSM1-203ENST00000520755 PSMB3P49720 205 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 UBE2G2P60604 165 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 EXOC3-AS1Q8N2X6 119 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 C16orf92Q96LL3 132 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 Q9H3A6 140 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 MAP6D1Q9H9H5 199 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 C19orf73Q9NVV2 129 aa11.38□□□□□ -0.59
LSM1-203ENST00000520755 FAM74A7A6NL05 159 aa11.37□□□□□ -0.59
LSM1-203ENST00000520755 IGHV4-30-4P0DP06 118 aa11.37□□□□□ -0.59
LSM1-203ENST00000520755 DEFB1P60022 68 aa11.37□□□□□ -0.59
LSM1-203ENST00000520755 TUBA4BQ9H853 241 aa11.37□□□□□ -0.59
LSM1-203ENST00000520755 TEX46H3BTG2 121 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 M0R3E3 92 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 RANP62826 216 aaKnown RBP11.36□□□□□ -0.59
LSM1-203ENST00000520755 ZNF124Q15973 351 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 CLLU1Q5K131 121 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 APRG1Q8IVJ8 170 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 SRD5A3Q9H8P0 318 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 GNG13Q9P2W3 67 aa11.36□□□□□ -0.59
LSM1-203ENST00000520755 A0A1W2PRE2 83 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 ZNF705FA8MVS1 300 aaPredicted RBP11.35□□□□□ -0.59
LSM1-203ENST00000520755 PAGE4O60829 102 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 FRMD6-AS1P0C7T7 363 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 ATP5G3P48201 142 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms