RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 C19orf67A6NJJ6 358 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 ITGB1BP1O14713 200 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 WT1-ASQ06250 92 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 SMAGPQ0VAQ4 97 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 PLA2G2EQ9NZK7 142 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 CHD3Q12873 2000 aaKnown RBP10.24□□□□□ -0.77
USP53-209ENST00000514665 ARMS2P0C7Q2 107 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 SRSF1Q07955 248 aaKnown RBP eCLIP10.24□□□□□ -0.77
USP53-209ENST00000514665 A8MWP6 167 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 SSC4DQ8WTU2 575 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 ORAOV1Q8WV07 137 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 TPSG1Q9NRR2 321 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 NDUFA4L2Q9NRX3 87 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 IGKV3D-20A0A0C4DH25 116 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 F2Z2F3 143 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 DLEU1O43261 78 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 SH2D1AO60880 128 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 DKK1O94907 266 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 DIAPH2-AS1Q14236 149 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 GTSCR1Q86UQ5 136 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 OR2K2Q8NGT1 345 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 LINC01587Q99440 93 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 POLR3KQ9Y2Y1 108 aaPredicted RBP10.23□□□□□ -0.77
USP53-209ENST00000514665 COL4A3Q01955 1670 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 FNDC10F2Z333 226 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 SYS1-DBNDD2H3BUS1 97 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 GUSBP1Q15486 140 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 TMEM155Q4W5P6 130 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 SIGLEC15Q6ZMC9 328 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 Q8NFD4 153 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 RNF5Q99942 180 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 KIF26AQ9ULI4 1882 aaPredicted RBP10.23□□□□□ -0.77
USP53-209ENST00000514665 KIAA1671Q9BY89 1806 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 HTTP42858 3142 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 SRRM4A7MD48 611 aaKnown RBP10.23□□□□□ -0.77
USP53-209ENST00000514665 H3BUX3 64 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 TOMM40O96008 361 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 CD300EQ496F6 205 aaPredicted RBP10.23□□□□□ -0.77
USP53-209ENST00000514665 RASL11AQ6T310 242 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 CEP295Q9C0D2 2601 aa10.23□□□□□ -0.77
USP53-209ENST00000514665 ZNF688P0C7X2 276 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 EFNA4P52798 201 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 DTX1Q86Y01 620 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 MED12LQ86YW9 2145 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 RNASE1P07998 156 aaKnown RBP10.22□□□□□ -0.77
USP53-209ENST00000514665 PAX1P15863 534 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 PSG3Q16557 428 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 Q86TA4 180 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 C18orf32Q8TCD1 76 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 CYSLTR1Q9Y271 337 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 PSMG4Q5JS54 123 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 OR4X2Q8NGF9 303 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 RNF138Q8WVD3 245 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 C2orf88Q9BSF0 95 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 MRPL27Q9P0M9 148 aaKnown RBP10.22□□□□□ -0.77
USP53-209ENST00000514665 TOMM7Q9P0U1 55 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 VCX2Q9H322 139 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 FAM215AQ9Y5M1 114 aa10.22□□□□□ -0.77
USP53-209ENST00000514665 IGKCP01834 107 aa10.21□□□□□ -0.77
USP53-209ENST00000514665 LOXP28300 417 aaPredicted RBP10.21□□□□□ -0.77
USP53-209ENST00000514665 GATA4P43694 442 aa10.21□□□□□ -0.77
USP53-209ENST00000514665 SETD2Q9BYW2 2564 aaPredicted RBP10.21□□□□□ -0.77
USP53-209ENST00000514665 TLN2Q9Y4G6 2542 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 IGLV1-44P01699 117 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 EMP1P54849 157 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 BPESC1Q9GZL8 116 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 IGHV2-70P01814 119 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 PRTN3P24158 256 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 MOB4Q9Y3A3 225 aa10.21□□□□□ -0.78
USP53-209ENST00000514665 IGLV3-9A0A075B6K5 115 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 IFI27P40305 119 aaPredicted RBP10.2□□□□□ -0.78
USP53-209ENST00000514665 Q0VG73 95 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 OR13C6PQ8NH95 151 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 LYPD6BQ8NI32 183 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 IGHV3-64A0A075B6Q5 118 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 ORMDL2Q53FV1 153 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 MINOS1Q5TGZ0 78 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 SHANK2-AS3Q9BTD1 123 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 SNHG12Q9BXW3 62 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 MS4A6AQ9H2W1 248 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 MINOS1-NBL1R4GNA1 71 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 NAV2Q8IVL1 2488 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 A0A0U1RRA0 63 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 ZNF815PA8K554 130 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 TMEM262E9PQX1 116 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 WT1P19544 449 aaPredicted RBP10.2□□□□□ -0.78
USP53-209ENST00000514665 SAA4P35542 130 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 ERCC8Q13216 396 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 SLAQ13239 276 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 TMEM249Q2WGJ8 235 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 C11orf53Q8IXP5 236 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 HIVEP3Q5T1R4 2406 aa10.2□□□□□ -0.78
USP53-209ENST00000514665 TMEM213A2RRL7 107 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 CFHR2P36980 270 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 CDPF1Q6NVV7 123 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 V9GYV3 84 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 OOSP1A8MZH6 123 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 Q6ZWC4 215 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 BCL6BQ8N143 479 aaPredicted RBP10.19□□□□□ -0.78
USP53-209ENST00000514665 C14orf178Q8N769 122 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms