RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 NINQ8N4C6 2090 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 A0A087WWC5 75 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 INS-IGF2F8WCM5 200 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 K7EM74 188 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 CBLN1P23435 193 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 SSBP2P81877 361 aaPredicted RBP3.4□□□□□ -1.86
VCAN-209ENST00000513016 IMMP2LQ96T52 175 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 PARD6GQ9BYG4 376 aaPredicted RBP3.4□□□□□ -1.86
VCAN-209ENST00000513016 ICOSQ9Y6W8 199 aa3.4□□□□□ -1.86
VCAN-209ENST00000513016 CD300EQ496F6 205 aaPredicted RBP3.4□□□□□ -1.87
VCAN-209ENST00000513016 EXOC3-AS1Q8N2X6 119 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 TMEM126AQ9H061 195 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 LSM4Q9Y4Z0 139 aaKnown RBP3.4□□□□□ -1.87
VCAN-209ENST00000513016 LDLRAD4O15165 306 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 LINC00614P0C842 121 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 NDUFA11Q86Y39 141 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 ZNF843Q8N446 348 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 DNAJC30Q96LL9 226 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 PYGO2Q9BRQ0 406 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 MS4A6AQ9H2W1 248 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 C17orf58Q2M2W7 97 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 TRAV3A0A0B4J244 114 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 LINC00473A8K010 186 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 F8VVB4 439 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 F8VWA3 439 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 UBE2CO00762 179 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 C15orf53Q8NAA6 179 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 IGF2BP2-AS1Q96M15 143 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 CSTL1Q9H114 145 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 C11orf68Q9H3H3 251 aaKnown RBP3.4□□□□□ -1.87
VCAN-209ENST00000513016 NDUFA4L2Q9NRX3 87 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 COL4A6Q14031 1691 aa3.4□□□□□ -1.87
VCAN-209ENST00000513016 DNAJC13O75165 2243 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 C15orf62A8K5M9 175 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 RPL23P62829 140 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 PAX2Q02962 417 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 KLF12Q9Y4X4 402 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 SELENOKQ9Y6D0 94 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 MYOFQ9NZM1 2061 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 IGKV1-5P01602 117 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 IGKCP01834 107 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 HOXD3P31249 432 aaPredicted RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 LYZL1Q6UWQ5 148 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 IFI27L1Q96BM0 104 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 MRPL53Q96EL3 112 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 MGST2Q99735 147 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 TRAV2A0A0B4J234 112 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 LEPROTO15243 131 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 NDUFS7O75251 213 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 ARMS2P0C7Q2 107 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 RPL32P62910 135 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 GFI1BQ5VTD9 330 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 HS3ST6Q96QI5 342 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 CHD5Q8TDI0 1954 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 LCTP09848 1927 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 TRAV13-1A0A0B4J241 112 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 IGHV1-24A0A0C4DH33 117 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 KNCNA6PVL3 124 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 GRNP28799 593 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 C8orf86Q6ZUL3 223 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 WIPF2Q8TF74 440 aaPredicted RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 C16orf74Q96GX8 76 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 ZNF48Q96MX3 618 aaPredicted RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 C1orf43Q9BWL3 253 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 GNB1LQ9BYB4 327 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 NHP2Q9NX24 153 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 IGKV1D-8A0A087WSZ0 117 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 M0R2P5 195 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 CRLF1O75462 422 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 CFHR3Q02985 330 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 RPP25LQ8N5L8 163 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 TMEM75Q8N9X5 138 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 RNASE7Q9H1E1 156 aaKnown RBP3.39□□□□□ -1.87
VCAN-209ENST00000513016 UBE2BP63146 152 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 ATXN8Q156A1 80 aa3.39□□□□□ -1.87
VCAN-209ENST00000513016 IGKV2D-24A0A075B6R9 120 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 DKK1O94907 266 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 PLP1P60201 277 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 LAIR2Q6ISS4 152 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 C14orf178Q8N769 122 aaPredicted RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 ZFC3H1O60293 1989 aaKnown RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 TCF20Q9UGU0 1960 aaKnown RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 I3L3M4 83 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 PRIMA1Q86XR5 153 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 OCC1Q8TAD7 63 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 GATD1Q8NB37 220 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 ZNRF2Q8NHG8 242 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 TMEM141Q96I45 108 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 TMEM14CQ9P0S9 112 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 KIAA1671Q9BY89 1806 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 MGAMO43451 1857 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 DOCK4Q8N1I0 1966 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 IGKV1-16P04430 117 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 NTF4P34130 210 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 PUSL1Q8N0Z8 303 aaKnown RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 SPRY4Q9C004 299 aa3.38□□□□□ -1.87
VCAN-209ENST00000513016 INTS1Q8N201 2190 aaKnown RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 ANGP03950 147 aaKnown RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 KLF5Q13887 457 aaPredicted RBP3.38□□□□□ -1.87
VCAN-209ENST00000513016 RNF126Q9BV68 326 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms