RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZNF727A8MUV8 499 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 NDUFC2-KCTD14E9PQ53 114 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 LY6LH3BQJ8 138 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 SYS1-DBNDD2H3BUS1 97 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 J3QQQ9 107 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 FCN1O00602 326 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 CXCL13O43927 109 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 ZNF737O75373 536 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 APOMO95445 188 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 OXTP01178 125 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 MT-ND6P03923 174 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 SLC25A5P05141 298 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 EIF4EP06730 217 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 SRP19P09132 144 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 CPMP14384 443 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 ZNF708P17019 499 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 CRYGSP22914 178 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PPICP45877 212 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 NMUP48645 174 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 RBM11P57052 281 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 PPP1CBP62140 327 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PRDX1Q06830 199 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 IL15RAQ13261 267 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 EIF3IQ13347 325 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 IGFBP7Q16270 282 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 LINC00303Q3SY05 128 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 Q56UQ5 140 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PSMG4Q5JS54 123 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 C9orf153Q5TBE3 101 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 LYRM7Q5U5X0 104 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 LCN12Q6JVE5 192 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 ACP7Q6ZNF0 438 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 Q6ZRU5 148 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 RFLNAQ6ZTI6 216 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PRSS41Q7RTY9 318 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 ZNF550Q7Z398 422 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 RPS19BP1Q86WX3 136 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 C10orf126Q8N4M7 172 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 LINC00471Q8N535 108 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 C3orf22Q8N5N4 141 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 NPWQ8N729 165 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 OR2T10Q8NGZ9 312 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 OR10AC1Q8NH08 325 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 MRPL30Q8TCC3 161 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 MYOZ3Q8TDC0 251 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PPP1R1CQ8WVI7 109 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PPDPFLQ8WWR9 84 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 COPS9Q8WXC6 57 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 DPH3Q96FX2 82 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 PGLYRP3Q96LB9 341 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 SCGB3A2Q96PL1 93 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 GPR21Q99679 349 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 NAA38Q9BRA0 125 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 RTL8AQ9BWD3 113 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 TMEM59Q9BXS4 323 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 MANBALQ9NQG1 85 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 C21orf62Q9NYP8 219 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 TAAR3PQ9P1P4 343 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 RGPD3A6NKT7 1758 aaPredicted RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 ADGRB1O14514 1584 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 TECPR2O15040 1411 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 RREB1Q92766 1687 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 WDR90Q96KV7 1748 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 IGHV1OR15-1A0A075B7D0 117 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRAV1-2A0A0B4J238 106 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRAV1-1A0A0B4J248 108 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 A0A0G2JRQ6 117 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 A0A1B0GWB2 263 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 LOC107986453A0A1B0GWG9 222 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 C5orf63A6NC05 138 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 LYRM9A8MSI8 78 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 H3BUT2 72 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 H7C1H1 209 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 K7EQS6 105 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 K7N7A8 449 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 DEDDO75618 318 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 P01737 135 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 IGHV3-48P01763 117 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRACP01848 142 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 APOC2P02655 101 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 ZNF688P0C7X2 276 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 SMIM13P0DJ93 91 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FGF6P10767 208 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 CRISP2P16562 243 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 AQP1P29972 269 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PFN2P35080 140 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 GALR1P47211 349 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FOXA3P55318 350 aaPredicted RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 FBXW4P57775 412 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TAS2R45P59539 299 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 KRTDAPP60985 99 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 RPL18AQ02543 176 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 ETDBQ3ZM63 59 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 SPRNQ5BIV9 151 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FAM201AQ5SY85 155 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 MRPL2Q5T653 305 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 HES3Q5TGS1 186 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 CYP2G1PQ6ZSU1 146 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 LHFPL1Q86WI0 220 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PRR15Q8IV56 129 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms