RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ZNF726P1Q15940 193 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 C5orf64Q2M2E5 130 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 PSMG4Q5JS54 123 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 LCE4AQ5TA78 99 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 NIT1Q86X76 327 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 ZBTB34Q8NCN2 500 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 KLHL30-AS1Q8NEE0 82 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 OR10P1Q8NGE3 313 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 OR5AN1Q8NGI8 311 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 DPF1Q92782 380 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 GPR146Q96CH1 333 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 CYYR1Q96J86 154 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 RITA1Q96K30 269 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 UBE2E2Q96LR5 201 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 ELOVL1Q9BW60 279 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 MRPL20Q9BYC9 149 aaKnown RBP6.25□□□□□ -1.41
SCN1A-207ENST00000507401 IFI27L2Q9H2X8 130 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 PSENENQ9NZ42 101 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 IGKV1D-8A0A087WSZ0 117 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 TRAV9-2A0A087WT02 112 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 IGLC7A0M8Q6 106 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM238C9JI98 176 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 SERF1AO75920 110 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 SCTP09683 121 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 LINC00869P0C866 280 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 PMCHP20382 165 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 NPY1RP25929 384 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 SLC38A11Q08AI6 406 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 RTL8BQ17RB0 113 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 VWC2Q2TAL6 325 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM14EPQ6UXP3 125 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 GTF2H5Q6ZYL4 71 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM256Q8N2U0 113 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 RPP25LQ8N5L8 163 aaKnown RBP6.24□□□□□ -1.41
SCN1A-207ENST00000507401 STPG4Q8N801 248 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 NECAP1Q8NC96 275 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 OR10G9Q8NGN4 311 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 OR10G7Q8NGN6 311 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 MYOZ3Q8TDC0 251 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM190Q8WZ59 177 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 RAX2Q96IS3 184 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 UHRF2Q96PU4 802 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 CHRDL1Q9BU40 450 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 CST9LQ9H4G1 147 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 PEF1Q9UBV8 284 aaKnown RBP6.24□□□□□ -1.41
SCN1A-207ENST00000507401 WASHC3Q9Y3C0 194 aa6.24□□□□□ -1.41
SCN1A-207ENST00000507401 IGHV7-81A0A0B4J1V7 117 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 TRAV41A0A0B4J266 112 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 K7EIL1 84 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 PROP1O75360 226 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 ZNF324O75467 553 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM50AO95807 157 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 AREGP15514 252 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 RAB9AP51151 201 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 CRIP2P52943 208 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-207ENST00000507401 KRTAP10-11P60412 298 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 SEC11AP67812 179 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 ZNF90Q03938 601 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM267Q0VDI3 215 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-207ENST00000507401 FHL3Q13643 280 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 VAMP3Q15836 100 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 RPEL1Q2QD12 228 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 ZNF562Q6V9R5 426 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 LCNL1Q6ZST4 164 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 C18orf65Q6ZTR6 163 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 ZNF491Q8N8L2 437 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-207ENST00000507401 C4orf3Q8WVX3 66 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 C11orf52Q96A22 123 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 HDHD3Q9BSH5 251 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-207ENST00000507401 QTRT1Q9BXR0 403 aaKnown RBP6.23□□□□□ -1.41
SCN1A-207ENST00000507401 NRN1Q9NPD7 142 aa6.23□□□□□ -1.41
SCN1A-207ENST00000507401 IGKV1-6A0A0C4DH72 117 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 G3V318 75 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 H0YJW9 148 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 FCN1O00602 326 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 RRHO14718 337 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 CNTFRP26992 372 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 LGALS7P47929 136 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 AMTP48728 403 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 CDC34P49427 236 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-207ENST00000507401 CX3CL1P78423 397 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 RPL39P5Q59GN2 51 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 DEFB121Q5J5C9 76 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 ETFRF1Q6IPR1 90 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 DEFB125Q8N687 156 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 OR4S2Q8NH73 311 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 OR4C12Q96R67 309 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 RSG1Q9BU20 258 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 MS4A6AQ9H2W1 248 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 OSTCQ9NRP0 149 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 OR1A1Q9P1Q5 309 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 OR2W1Q9Y3N9 320 aa6.22□□□□□ -1.41
SCN1A-207ENST00000507401 RBM7Q9Y580 266 aaKnown RBP6.22□□□□□ -1.41
SCN1A-207ENST00000507401 A0A1B0GV72 72 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 WI2-2373I1.2A0A1W2PRP0 233 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 M0R1X1 148 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 CORTO00230 105 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 ATP6V0E1O15342 81 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 PGLYRP1O75594 196 aaPredicted RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms