RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 KIAA1217Q5T5P2 1943 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 ZNF646O15015 1829 aaPredicted RBP4.77□□□□□ -1.65
USF3-204ENST00000496826 ERCC6L2Q5T890 1561 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 DIP2BQ9P265 1576 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 KCPQ6ZWJ8 1503 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 LINC01548A6NM66 108 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 NCR3O14931 201 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 RPL35AP18077 110 aaKnown RBP4.77□□□□□ -1.65
USF3-204ENST00000496826 MST1LQ2TV78 715 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 ATP6V0E2Q8NHE4 81 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 F5P12259 2224 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 IGHMP01871 453 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 DEFB130BP0DP73 79 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 DEFB130AP0DP74 79 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 CDPF1Q6NVV7 123 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 SMIM14Q96QK8 99 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 LY6G6FQ5SQ64 297 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 LCNL1Q6ZST4 164 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 NMBP08949 121 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 COX6A1P12074 109 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 ACYP2P14621 99 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 RNF183Q96D59 192 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 C20orf78Q9BR46 151 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 TMEM14CQ9P0S9 112 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 MRPS18BQ9Y676 258 aaKnown RBP4.77□□□□□ -1.65
USF3-204ENST00000496826 PRR30Q53SZ7 412 aaPredicted RBP4.77□□□□□ -1.65
USF3-204ENST00000496826 LDLRAD1Q5T700 205 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 BCL9LQ86UU0 1499 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 KDM6BO15054 1643 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 IGHV3-20A0A0C4DH32 117 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 SPTY2D1-AS1A0A0U1RR47 76 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 C3orf79P0CE67 100 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 Q6ZUT4 128 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 PIP4P2Q8N4L2 257 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 IGHV3-64A0A075B6Q5 118 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 MUC7Q8TAX7 377 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 IGHV1-58A0A0C4DH39 117 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 ELANEP08246 267 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 CD300CQ08708 224 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 WFDC1Q9HC57 220 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 C9orf118A6NHY6 69 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 SHISA8B8ZZ34 492 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 PGLYRP1O75594 196 aaPredicted RBP4.76□□□□□ -1.65
USF3-204ENST00000496826 CFHR3Q02985 330 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 MUC21Q5SSG8 566 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 HIST2H2BCQ6DN03 193 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 HIST2H2BDQ6DRA6 164 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 LYZL1Q6UWQ5 148 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 TMEM75Q8N9X5 138 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 TAF1P21675 1872 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 UQCRQO14949 82 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 SERF1AO75920 110 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 SIGLEC9Q9Y336 463 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 MED1Q15648 1581 aaPredicted RBP4.76□□□□□ -1.65
USF3-204ENST00000496826 DISP1Q96F81 1524 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 NPYP01303 97 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 COX17Q14061 63 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 Q6ZT83 130 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 C1QL2Q7Z5L3 287 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 HIST3H2BBQ8N257 126 aa4.76□□□□□ -1.65
USF3-204ENST00000496826 SPAG11BQ08648 103 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 LINC00322Q6ZN03 302 aaPredicted RBP4.75□□□□□ -1.65
USF3-204ENST00000496826 NANOS2P60321 138 aaKnown RBP4.75□□□□□ -1.65
USF3-204ENST00000496826 PFN3P60673 137 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 FOXL2P58012 376 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 ESM1Q9NQ30 184 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 ADAMTS12P58397 1594 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 FOXI1Q12951 378 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 MSRB3Q8IXL7 192 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 SHANK1Q9Y566 2161 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 IGKV2D-26A0A0A0MRZ7 120 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 FAM182BQ5T319 152 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 FAM110AQ9BQ89 295 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 TMEM133Q9H2Q1 129 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 P0C879 139 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 DEFB112Q30KQ8 113 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 CACNA1GO43497 2377 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 SPHKAPQ2M3C7 1700 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 IGKV1OR2-108A0A075B7D4 117 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 TINCRA0A1B0GVN0 87 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 A6NNC1 897 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 PMAIP1Q13794 54 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 C12orf74Q32Q52 190 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 COX7B2Q8TF08 81 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 MDFIQ99750 246 aa4.75□□□□□ -1.65
USF3-204ENST00000496826 C16orf74Q96GX8 76 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 PYGO2Q9BRQ0 406 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 TSSC4Q9Y5U2 329 aaPredicted RBP4.74□□□□□ -1.65
USF3-204ENST00000496826 V9GYV3 84 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 TRBV30A0A0K0K1B3 111 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 H3BUA1 57 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 COX7BP24311 80 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 PBRM1Q86U86 1689 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 E9PLD3 99 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 NXPH4O95158 308 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 FAM19A3Q7Z5A8 133 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 PRB4P10163 310 aaPredicted RBP4.74□□□□□ -1.65
USF3-204ENST00000496826 SEM1Q6ZVN7 128 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 LINC00643Q86TS7 51 aa4.74□□□□□ -1.65
USF3-204ENST00000496826 RASL10BQ96S79 203 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms