RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 BVES-AS1Q5T3Y7 98 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 CSTL1Q9H114 145 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 PSG8Q9UQ74 426 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 PTPRSQ13332 1948 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 D6R8Y8 96 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 TMEM131Q92545 1883 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 GAGE13Q4V321 117 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 PSMG4Q5JS54 123 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 EXOC3-AS1Q8N2X6 119 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 DYNLRB2Q8TF09 96 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 PLA2G5P39877 138 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 PSG3Q16557 428 aa13.19□□□□□ -0.3
CCDC88B-209ENST00000494080 TCRAP04437 139 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 PRSS2P07478 247 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 TNFRSF14Q92956 283 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 NCR2O95944 276 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 TCF15Q12870 199 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 RNF125Q96EQ8 232 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 BEX4Q9NWD9 120 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 EML6Q6ZMW3 1958 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 VWC2Q2TAL6 325 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 TMEM167AQ8TBQ9 72 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 C11orf52Q96A22 123 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 IGKV3-20P01619 116 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 ID1P41134 155 aa13.18□□□□□ -0.3
CCDC88B-209ENST00000494080 ZNF134P52741 427 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 GTSCR1Q86UQ5 136 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 DPM2O94777 84 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 FRMD6-AS1P0C7T7 363 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 FAM106AQ4KMX7 169 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 Q8NFD4 153 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 DKK4Q9UBT3 224 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 EBLN2Q6P2I7 272 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 C11orf1Q9H5F2 150 aa13.17□□□□□ -0.3
CCDC88B-209ENST00000494080 SAP30O75446 220 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 EVI2AP22794 236 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 VDAC2P45880 294 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 FAM71F2Q6NXP2 309 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 IGHV3OR16-12A0A075B7B8 117 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 IGHV1-24A0A0C4DH33 117 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 ADAMTSL5Q6ZMM2 481 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 MUC22E2RYF6 1773 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 TRAV40A0A0B4J280 105 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 SMIM27A0A1W2PRY6 76 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 SNCGO76070 127 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 PPIFP30405 207 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 ZNF329Q86UD4 541 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 ABCA2Q9BZC7 2435 aa13.16□□□□□ -0.3
CCDC88B-209ENST00000494080 SMAD7O15105 426 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 RHOGP84095 191 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 MED12LQ86YW9 2145 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 IGKCP01834 107 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 GATA4P43694 442 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 C11orf53Q8IXP5 236 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 IGLV3-9A0A075B6K5 115 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 IFI27P40305 119 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 NBL1P41271 181 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 RAB9AP51151 201 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 C17orf58Q2M2W7 97 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 ANKRD39Q53RE8 183 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 TMEM219Q86XT9 240 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 SCGB3A1Q96QR1 104 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 ANAPC13Q9BS18 74 aa13.15□□□□□ -0.3
CCDC88B-209ENST00000494080 BUB1B-PAK6H3BSN5 160 aa13.15□□□□□ -0.31
CCDC88B-209ENST00000494080 C9orf118A6NHY6 69 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 C15orf65H3BRN8 121 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 VMO1Q7Z5L0 202 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 ZNF256Q9Y2P7 627 aaPredicted RBP13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 SIGLEC9Q9Y336 463 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 PHLDA3Q9Y5J5 127 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 MYO9AB2RTY4 2548 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 C2CD3Q4AC94 2353 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 EFNA4P52798 201 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 ASCL2Q99929 193 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 TNCP24821 2201 aa13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 RNASE2P10153 161 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-209ENST00000494080 PMS2P5A8MQ11 134 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 H3BRM9 83 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 HAX1O00165 279 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 ARMS2P0C7Q2 107 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 RBX1P62877 108 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 SPRNQ5BIV9 151 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 TMEM170BQ5T4T1 132 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 LYZL1Q6UWQ5 148 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 IGFL2Q6UWQ7 119 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 DEFB125Q8N687 156 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 COX6CP09669 75 aa13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 RANBP2P49792 3224 aaKnown RBP13.13□□□□□ -0.31
CCDC88B-209ENST00000494080 M0R381 172 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 COX8AP10176 69 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 LGALS3P17931 250 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 BRD3OSQ6XYD6 125 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 ODF3L1Q8IXM7 274 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 C8orf46Q8TAG6 207 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 NXT2Q9NPJ8 142 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 NPIPB5A8MRT5 1133 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 CFHR2P36980 270 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 EMP1P54849 157 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 Q6ZSR3 168 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms