RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 IGLV2-11P01706 119 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 PPBPP02775 128 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 PYYP10082 97 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 NTF3P20783 257 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 GATA2P23769 480 aaPredicted RBP4.61□□□□□ -1.67
VPS41-214ENST00000490924 CDKN1BP46527 198 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 RAB9AP51151 201 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 HOXA4Q00056 320 aaPredicted RBP4.61□□□□□ -1.67
VPS41-214ENST00000490924 KIAA1644Q3SXP7 199 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 SPRNQ5BIV9 151 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 UTF1Q5T230 341 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 PPP1R27Q86WC6 154 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 RPRMLQ8N4K4 120 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 OR9G4Q8NGQ1 327 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 GTSF1Q8WW33 167 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 RNASE6Q93091 150 aaKnown RBP4.61□□□□□ -1.67
VPS41-214ENST00000490924 URB1-AS1Q96HZ7 61 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 ATP6V0BQ99437 205 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 CNFNQ9BYD5 112 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 SLC25A39Q9BZJ4 359 aaPredicted RBP4.61□□□□□ -1.67
VPS41-214ENST00000490924 LOC400499M0QZD8 3231 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 INTS1Q8N201 2190 aaKnown RBP4.61□□□□□ -1.67
VPS41-214ENST00000490924 FAM208BQ5VWN6 2430 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 CEP250Q9BV73 2442 aa4.61□□□□□ -1.67
VPS41-214ENST00000490924 PCNX2A6NKB5 2137 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 SH2D7A6NKC9 451 aaPredicted RBP4.6□□□□□ -1.67
VPS41-214ENST00000490924 NPIPB5A8MRT5 1133 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 E7EUB6 86 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 LY6LH3BQJ8 138 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 SLC25A17O43808 307 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 NDUFA3O95167 84 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 CA1P00915 261 aaPredicted RBP4.6□□□□□ -1.67
VPS41-214ENST00000490924 HLA-DRB4P13762 266 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 MYOD1P15172 320 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 PTTG1IPP53801 180 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 PSG9Q00887 426 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 PSG3Q16557 428 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 DEFB109BQ30KR1 87 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 LGALS9BQ3B8N2 356 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 Q56UQ5 140 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 FAM201AQ5SY85 155 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 LGALS9CQ6DKI2 356 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 RNASEKQ6P5S7 137 aaKnown RBP4.6□□□□□ -1.67
VPS41-214ENST00000490924 DUX4L9Q6RFH8 374 aaPredicted RBP4.6□□□□□ -1.67
VPS41-214ENST00000490924 ZNF841Q6ZN19 808 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 C1orf122Q6ZSJ8 110 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 FAM19A2Q8N3H0 131 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 NPBQ8NG41 125 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 OR1B1Q8NGR6 318 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 RND1Q92730 232 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 LINC00479Q96M42 142 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 RASL11BQ9BPW5 248 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 SCRT2Q9NQ03 307 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 HLA-DRB4X5D2U9 266 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 DSCAMO60469 2012 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 DYSFO75923 2080 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 PLCE1Q9P212 2302 aa4.6□□□□□ -1.67
VPS41-214ENST00000490924 IGHV1-3A0A0C4DH29 117 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 WI2-2373I1.2A0A1W2PRP0 233 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 BUB1B-PAK6H3BSN5 160 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 M0R1W7 72 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 SPTBN2O15020 2390 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 MRPS12O15235 138 aaKnown RBP4.59□□□□□ -1.67
VPS41-214ENST00000490924 CCL25O15444 150 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 IGKV1-17P01599 117 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 IGHV3-7P01780 117 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 COX8AP10176 69 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 CCL3L1P16619 93 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 WT1P19544 449 aaPredicted RBP4.59□□□□□ -1.67
VPS41-214ENST00000490924 ORM2P19652 201 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 HTR1DP28221 377 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 APOBEC3AP31941 199 aaPredicted RBP4.59□□□□□ -1.67
VPS41-214ENST00000490924 CAMPP49913 170 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 SLC35B1P78383 322 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 CCL8P80075 99 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 FBXL19-AS1Q494R0 122 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 BVES-AS1Q5T3Y7 98 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 SIGLEC15Q6ZMC9 328 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 LY6G5BQ8NDX9 201 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 DEFB108BQ8NET1 73 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 OR11H6Q8NGC7 330 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 SRSF12Q8WXF0 261 aaKnown RBP4.59□□□□□ -1.67
VPS41-214ENST00000490924 DIDO1Q9BTC0 2240 aaKnown RBP4.59□□□□□ -1.67
VPS41-214ENST00000490924 CLEC5AQ9NY25 188 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 PEF1Q9UBV8 284 aaKnown RBP4.59□□□□□ -1.67
VPS41-214ENST00000490924 INSIG2Q9Y5U4 225 aa4.59□□□□□ -1.67
VPS41-214ENST00000490924 ITPR1Q14643 2758 aa4.59□□□□□ -1.68
VPS41-214ENST00000490924 CEP295Q9C0D2 2601 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 TRAV34A0A0B4J273 112 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 C7orf71A4D174 169 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 RBAKDNA6NC62 111 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 A6NNC1 897 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 SPINK4O60575 86 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 FCN3O75636 299 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 PSG1P11464 419 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 RPL7P18124 248 aaKnown RBP4.58□□□□□ -1.68
VPS41-214ENST00000490924 BMI1P35226 326 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 RBX1P62877 108 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 GNG5P63218 68 aa4.58□□□□□ -1.68
VPS41-214ENST00000490924 SSBP2P81877 361 aaPredicted RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms