RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 HIST1H1BP16401 226 aaKnown RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 ZNF22P17026 224 aaPredicted RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 GNG4P50150 75 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 MRPS36P82909 103 aaKnown RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 LCN15Q6UWW0 184 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 IZUMO2Q6UXV1 221 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 SLC35E3Q7Z769 313 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 RPS19BP1Q86WX3 136 aaKnown RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 C8orf59Q8N0T1 100 aaPredicted RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 FAM216BQ8N7L0 139 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 C3orf56Q8N813 242 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 Q8NAQ8 132 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 PP6455Q8WZ26 134 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 DIRC1Q969H9 104 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 MRPS24Q96EL2 167 aaKnown RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 OR8B2Q96RD0 313 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 BCL2L10Q9HD36 194 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 ZFP30Q9Y2G7 519 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 FAM215AQ9Y5M1 114 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 SIPA1L1O43166 1804 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 MYH11P35749 1972 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 RIC1Q4ADV7 1423 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 GRIN2AQ12879 1464 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 A0A1B0GU33 70 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 LOC100130705A0A1B0GUX0 176 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 GNRH2O43555 120 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 FUSP35637 526 aaKnown RBP eCLIP2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 SNRPD3P62318 126 aaKnown RBP2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 RELAQ04206 551 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 FOXF1Q12946 379 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 CDK5R1Q15078 307 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 CCSMST1Q4G0I0 132 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 PABPC1L2AQ5JQF8 200 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 MEIG1Q5JSS6 88 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 PATE2Q6UY27 113 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 TMEM91Q6ZNR0 172 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 AAED1Q7RTV5 226 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 TEN1Q86WV5 123 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 LYPD6Q86Y78 171 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 Q8NDZ9 215 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 CHCHD1Q96BP2 118 aaKnown RBP2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 CIB3Q96Q77 187 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 SDF2Q99470 211 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 LINC00467Q9BRT7 94 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 DUSP21Q9H596 190 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 MINOS1-NBL1R4GNA1 71 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 KDM6AO15550 1401 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 VPS8Q8N3P4 1428 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 SYNJ1O43426 1573 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 NALCNQ8IZF0 1738 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 MAST2Q6P0Q8 1798 aa2.31□□□□□ -2.04
HMGB1P38-201ENST00000490557 DENND4CQ5VZ89 1909 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 PLXNB1O43157 2135 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 SDK2Q58EX2 2172 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 TMEM218A2RU14 115 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 LYRM1O43325 122 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 CRYGAP11844 174 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 DEFA4P12838 97 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 FABP4P15090 132 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 ZNF93P35789 620 aaPredicted RBP2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 KRTAP25-1Q3LHN0 102 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 FAM27BQ5VT28 67 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 TEX261Q6UWH6 196 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 GTF2H5Q6ZYL4 71 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 ATOH7Q8N100 152 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 ACBD7Q8N6N7 88 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 PKMYT1Q99640 499 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 BOKQ9UMX3 212 aaPredicted RBP2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 HHLA3Q9XRX5 114 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 ARHGAP31Q2M1Z3 1444 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 TCOF1Q13428 1488 aaKnown RBP2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 RIMBP3CA6NJZ7 1639 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 RIMBP3BA6NNM3 1639 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 RIMBP3Q9UFD9 1639 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 ECM29Q5VYK3 1845 aa2.3□□□□□ -2.04
HMGB1P38-201ENST00000490557 LTBP4Q8N2S1 1624 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 DLC1Q96QB1 1528 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 FAM135BQ49AJ0 1406 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 PVALEFA0A1B0GWK0 134 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 A0A1W2PNN7 141 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 IFITM5A6NNB3 132 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 M0R143 59 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 PSCAO43653 123 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 SYNGR2O43760 224 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 IFNA17P01571 189 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 RBP4P02753 201 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 PYYP10082 97 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 DEFB134Q4QY38 66 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 CLLU1Q5K131 121 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 KCNRGQ8N5I3 272 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 LINC00311Q8N616 119 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 COPS9Q8WXC6 57 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 RETNLBQ9BQ08 111 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 HIGD2AQ9BW72 106 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 TPRKBQ9Y3C4 175 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 LY96Q9Y6Y9 160 aa2.29□□□□□ -2.04
HMGB1P38-201ENST00000490557 UBR2Q8IWV8 1755 aa2.28□□□□□ -2.04
HMGB1P38-201ENST00000490557 IGLV3-9A0A075B6K5 115 aa2.28□□□□□ -2.04
HMGB1P38-201ENST00000490557 IGHV1-18A0A0C4DH31 117 aa2.28□□□□□ -2.04
HMGB1P38-201ENST00000490557 LOC107986453A0A1B0GWG9 222 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms