RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 NUP210Q8TEM1 1887 aaPredicted RBP0.6□□□□□ -2.31
CPSF3-205ENST00000489629 MED14O60244 1454 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 CICQ96RK0 1608 aaPredicted RBP0.6□□□□□ -2.31
CPSF3-205ENST00000489629 MYO18AQ92614 2054 aaKnown RBP0.6□□□□□ -2.31
CPSF3-205ENST00000489629 PDZD2O15018 2839 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 PBRM1Q86U86 1689 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 FBN2P35556 2912 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 NBEAL1Q6ZS30 2694 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 SYNJ1O43426 1573 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 TLN1Q9Y490 2541 aaKnown RBP0.59□□□□□ -2.31
CPSF3-205ENST00000489629 UNC13CQ8NB66 2214 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 IGKV2D-26A0A0A0MRZ7 120 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 RIIAD1A6NNX1 92 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 E5RI56 91 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 FABP1P07148 127 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 TMBIM6P55061 237 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 ARPP19P56211 112 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 VBP1P61758 197 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 UBE2BP63146 152 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 C1orf134Q5TEV5 83 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 C12orf29Q8N999 325 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 OR2T35Q8NGX2 323 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 CANT1Q8WVQ1 401 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 OBSCN-AS1Q96MR7 158 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 SLC25A21Q9BQT8 299 aaPredicted RBP0.59□□□□□ -2.31
CPSF3-205ENST00000489629 BOLA2Q9H3K6 86 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 TAF9BQ9HBM6 251 aa0.59□□□□□ -2.31
CPSF3-205ENST00000489629 NHP2Q9NX24 153 aaKnown RBP0.59□□□□□ -2.31
CPSF3-205ENST00000489629 GVINP1Q7Z2Y8 2422 aa0.59□□□□□ -2.32
CPSF3-205ENST00000489629 KIF21BO75037 1637 aa0.59□□□□□ -2.32
CPSF3-205ENST00000489629 REV3LO60673 3130 aa0.59□□□□□ -2.32
CPSF3-205ENST00000489629 SIP14410 1827 aa0.59□□□□□ -2.32
CPSF3-205ENST00000489629 LRRC7Q96NW7 1537 aa0.59□□□□□ -2.32
CPSF3-205ENST00000489629 FLNCQ14315 2725 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 ANKRD31Q8N7Z5 1873 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 CELSR2Q9HCU4 2923 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 HERC2O95714 4834 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 THOC2Q8NI27 1593 aaKnown RBP0.58□□□□□ -2.32
CPSF3-205ENST00000489629 TENM3Q9P273 2699 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 CFAP54Q96N23 3096 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 LOC110117498A0A087WWA1 95 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 TRGV10A0A0A0MS01 117 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 FUOMA2VDF0 154 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 TRGC2P03986 189 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 HLA-EP13747 358 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 POU6F1Q14863 301 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 SPRNQ5BIV9 151 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 BCL2L15Q5TBC7 163 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 FKBP1CQ5VVH2 108 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 C3orf33Q6P1S2 294 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 TEX261Q6UWH6 196 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 GRINAQ7Z429 371 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 STX19Q8N4C7 294 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 Q8N814 137 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 OR4C6Q8NH72 309 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 Q8TAT8 98 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 TEX37Q96LM6 180 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 OR2J1Q9GZK6 312 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 C6orf62Q9GZU0 229 aaPredicted RBP0.58□□□□□ -2.32
CPSF3-205ENST00000489629 PBOV1Q9GZY1 135 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 PCBD2Q9H0N5 130 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 POPDC3Q9HBV1 291 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 OTORQ9NRC9 128 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 OR52A1Q9UKL2 312 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 ZFP30Q9Y2G7 519 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 U3KQ87 197 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 NBEAQ8NFP9 2946 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 PTPRMP28827 1452 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 CFAP43Q8NDM7 1665 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 FAM208BQ5VWN6 2430 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 C5orf42Q9H799 3197 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 ABCA13Q86UQ4 5058 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 MYLKQ15746 1914 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 AHNAK2Q8IVF2 5795 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 SNRNP200O75643 2136 aaKnown RBP0.58□□□□□ -2.32
CPSF3-205ENST00000489629 ROS1P08922 2347 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 ZFYVE26Q68DK2 2539 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 HTTP42858 3142 aa0.58□□□□□ -2.32
CPSF3-205ENST00000489629 SYNMO15061 1565 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 CEP290O15078 2479 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 MUC3AQ02505 3323 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 PIK3C2AO00443 1686 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 RIMS1Q86UR5 1692 aaKnown RBP0.57□□□□□ -2.32
CPSF3-205ENST00000489629 TLCD2A6NGC4 264 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 CCDC160A6NGH7 325 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 A8MWV9 139 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 ZNF736B4DX44 427 aaPredicted RBP0.57□□□□□ -2.32
CPSF3-205ENST00000489629 H7BYZ3 331 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 AIPO00170 330 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 HYPMO75409 117 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 PROSCO94903 275 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 DHFRP00374 187 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 CD2P06729 351 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 PRB4P10163 310 aaPredicted RBP0.57□□□□□ -2.32
CPSF3-205ENST00000489629 IDO1P14902 403 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 IL9P15248 144 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 OGNP20774 298 aaKnown RBP0.57□□□□□ -2.32
CPSF3-205ENST00000489629 SERPINB1P30740 379 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 TRIQKQ629K1 86 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 EIF5AL1Q6IS14 154 aaKnown RBP0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms