RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 SPXQ9BT56 116 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 RSPO3Q9BXY4 272 aaPredicted RBP14.25□□□□□ -0.13
NPHP4-209ENST00000489180 CST9LQ9H4G1 147 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 A8MWP6 167 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 ZNF726P1Q15940 193 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 GAGE12BA1L429 117 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 PAX9P55771 341 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 DLX4Q92988 240 aaPredicted RBP14.25□□□□□ -0.13
NPHP4-209ENST00000489180 C1orf159Q96HA4 380 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 LYPD1Q8N2G4 141 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 SHANK2-AS3Q9BTD1 123 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 TNFRSF6BO95407 300 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 SIP14410 1827 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 LIME1Q9H400 295 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 PRADC1Q9BSG0 188 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 RHPN1-AS1Q9BWJ2 59 aa14.24□□□□□ -0.13
NPHP4-209ENST00000489180 MBD3L4A6NDZ8 208 aaPredicted RBP14.24□□□□□ -0.13
NPHP4-209ENST00000489180 MBD3L3A6NE82 208 aaPredicted RBP14.24□□□□□ -0.13
NPHP4-209ENST00000489180 MBD3L5A6NJ08 208 aaPredicted RBP14.24□□□□□ -0.13
NPHP4-209ENST00000489180 MBD3L2Q8NHZ7 208 aaPredicted RBP14.24□□□□□ -0.13
NPHP4-209ENST00000489180 TRAV8-3A0A0A6YYJ7 113 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 KIAA2026Q5HYC2 2103 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 LINC01549A6NIU2 74 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 PFN1P07737 140 aaKnown RBP14.23□□□□□ -0.13
NPHP4-209ENST00000489180 JPT2Q9H910 190 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 TRAV13-1A0A0B4J241 112 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 M0R1W7 72 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 C18orf32Q8TCD1 76 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 PIP4P2Q8N4L2 257 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 ZNF524Q96C55 264 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 SBF1O95248 1867 aa14.23□□□□□ -0.13
NPHP4-209ENST00000489180 RPL36AP83881 106 aaKnown RBP14.22□□□□□ -0.13
NPHP4-209ENST00000489180 ADAMTSL5Q6ZMM2 481 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 RPL36ALQ969Q0 106 aaKnown RBP14.22□□□□□ -0.13
NPHP4-209ENST00000489180 ZNF625Q96I27 306 aaPredicted RBP14.22□□□□□ -0.13
NPHP4-209ENST00000489180 Q0VG73 95 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 OOSP1A8MZH6 123 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 DUX4L9Q6RFH8 374 aaPredicted RBP14.22□□□□□ -0.13
NPHP4-209ENST00000489180 ARTNQ5T4W7 220 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 COX11Q9Y6N1 276 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 A0A087WX48 190 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 GNLYP22749 145 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 GFRA4Q9GZZ7 299 aa14.22□□□□□ -0.13
NPHP4-209ENST00000489180 CD5LO43866 347 aa14.21□□□□□ -0.13
NPHP4-209ENST00000489180 CFPP27918 469 aa14.21□□□□□ -0.13
NPHP4-209ENST00000489180 RASL10AQ92737 203 aa14.21□□□□□ -0.13
NPHP4-209ENST00000489180 C1orf147Q96MC9 270 aaPredicted RBP14.21□□□□□ -0.13
NPHP4-209ENST00000489180 OVOL3O00110 214 aa14.21□□□□□ -0.14
NPHP4-209ENST00000489180 GHRHP01286 108 aa14.21□□□□□ -0.14
NPHP4-209ENST00000489180 FNDC10F2Z333 226 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 DKK1O94907 266 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 SAA4P35542 130 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 PRSS57Q6UWY2 283 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 IGKV1-39P01597 117 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 IGKV1D-39P04432 117 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 IL17RELQ6ZVW7 336 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 VGLL1Q99990 258 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 TIMM21Q9BVV7 248 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 E7EQL1 145 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 RUSC1-AS1Q66K80 236 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 SNHG12Q9BXW3 62 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 TMEM14BQ9NUH8 114 aa14.2□□□□□ -0.14
NPHP4-209ENST00000489180 VWA8A3KMH1 1905 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 TMEM190Q8WZ59 177 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 LAMTOR3Q9UHA4 124 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 IGHG3P01860 377 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 FAM231BA6NCW3 169 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 LURAP1LQ8IV03 231 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 BPESC1Q9GZL8 116 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 KNCNA6PVL3 124 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 NDUFS8O00217 210 aa14.19□□□□□ -0.14
NPHP4-209ENST00000489180 SSBP2P81877 361 aaPredicted RBP14.19□□□□□ -0.14
NPHP4-209ENST00000489180 FAM223BA6NKX1 122 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 C9JAW5 83 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 FAM223AQ8IWN6 122 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 TMEM75Q8N9X5 138 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 ZNF114Q8NC26 417 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 Q6ZWC4 215 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 WDR86Q86TI4 376 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 ZNF48Q96MX3 618 aaPredicted RBP14.18□□□□□ -0.14
NPHP4-209ENST00000489180 ANAPC10Q9UM13 185 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 ZNF503-AS2A6NEH8 195 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 SLAQ13239 276 aa14.18□□□□□ -0.14
NPHP4-209ENST00000489180 TRAV26-2A0A0B4J265 109 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 LGALS1P09382 135 aaKnown RBP14.17□□□□□ -0.14
NPHP4-209ENST00000489180 SYNJ2BPP57105 145 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 DTX2Q86UW9 622 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 KLHL30-AS1Q8NEE0 82 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 NDUFA4L2Q9NRX3 87 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 POLEQ07864 2286 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 B4DSR2 109 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 ITGB1BP1O14713 200 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 C6orf226Q5I0X4 101 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 Q6ZR03 302 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 MRPL52Q86TS9 123 aaKnown RBP14.17□□□□□ -0.14
NPHP4-209ENST00000489180 NDUFB8O95169 186 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 USMG5Q96IX5 58 aa14.17□□□□□ -0.14
NPHP4-209ENST00000489180 ATP6V0E1O15342 81 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 TP53TG1Q9Y2A0 90 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 TCF20Q9UGU0 1960 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms