RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 LAMA4Q16363 1823 aa0.54□□□□□ -2.32
PTPN4-212ENST00000488896 NCOA1Q15788 1441 aa0.54□□□□□ -2.32
PTPN4-212ENST00000488896 MYO18AQ92614 2054 aaKnown RBP0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RIMBP3CA6NJZ7 1639 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RIMBP3BA6NNM3 1639 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RIMBP3Q9UFD9 1639 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 LOC107984156A0A0G2JMH3 177 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 TRBV6-4A0A1B0GX49 114 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 MAP1LC3B2A6NCE7 125 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 E7EUB6 86 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 GPR31O00270 319 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 HIST1H2BKO60814 126 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 PFDN1O60925 122 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 CST7O76096 145 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 TRGC2P03986 189 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 HIST1H2BJP06899 126 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 FABP1P07148 127 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 CXCL8P10145 99 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 FABP2P12104 132 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 CYBAP13498 195 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 IDO1P14902 403 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 SERPINB1P30740 379 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 HBBP68871 147 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 POU6F1Q14863 301 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RTL8BQ17RB0 113 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 LINC00322Q6ZN03 302 aaPredicted RBP0.53□□□□□ -2.32
PTPN4-212ENST00000488896 GRINAQ7Z429 371 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 STX12Q86Y82 276 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 ARL17AQ8IVW1 177 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 GRPEL2Q8TAA5 225 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 HYLS1Q96M11 299 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 LINC00052Q96N35 136 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 AMELYQ99218 206 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 SELENOSQ9BQE4 189 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RTL8AQ9BWD3 113 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RNF122Q9H9V4 155 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 NAT8BQ9UHF3 227 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 RNF11Q9Y3C5 154 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 ZFC3H1O60293 1989 aaKnown RBP0.53□□□□□ -2.32
PTPN4-212ENST00000488896 TET1Q8NFU7 2136 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 ADGRL3Q9HAR2 1447 aa0.53□□□□□ -2.32
PTPN4-212ENST00000488896 NEO1Q92859 1461 aa0.53□□□□□ -2.33
PTPN4-212ENST00000488896 KIF1BO60333 1816 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 MGAMO43451 1857 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 FREM3P0C091 2139 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 PPP5D1E7EU14 171 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 C5orf67F2Z3F1 127 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 H3BQV1 296 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 M0R2N4 97 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 INE1O15225 51 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 NUPR1O60356 82 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 CSN2P05814 226 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 DSCR4P56555 118 aaPredicted RBP0.52□□□□□ -2.33
PTPN4-212ENST00000488896 NDUFA6P56556 154 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 ROMO1P60602 79 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 DIAPH2-AS1Q14236 149 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 C1orf140Q5VVS0 124 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 FAM216BQ8N7L0 139 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 CCDC32Q9BV29 185 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 PCBD2Q9H0N5 130 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 TCEAL2Q9H3H9 227 aaPredicted RBP0.52□□□□□ -2.33
PTPN4-212ENST00000488896 LAMTOR3Q9UHA4 124 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 V9GYQ6 96 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 KIAA1549Q9HCM3 1950 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 SPTBP11277 2137 aa0.52□□□□□ -2.33
PTPN4-212ENST00000488896 TRAV27A0A087WT01 109 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 hDV103S1A0JD37 113 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 C9orf170A2RU37 121 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 KPNA4O00629 521 aaPredicted RBP0.51□□□□□ -2.33
PTPN4-212ENST00000488896 PPYP01298 95 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 S100A11P31949 105 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 TMEM14EPQ6UXP3 125 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 LYG2Q86SG7 212 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 TEX29Q8N6K0 151 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 PSMF1Q92530 271 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 PRRT1Q99946 306 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 OTORQ9NRC9 128 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 MYH2Q9UKX2 1941 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 TPRKBQ9Y3C4 175 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 ASB4Q9Y574 426 aa0.51□□□□□ -2.33
PTPN4-212ENST00000488896 TANC2Q9HCD6 1990 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 PTPRFP10586 1907 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 MYH3P11055 1940 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 ARHGEF28Q8N1W1 1705 aaKnown RBP0.5□□□□□ -2.33
PTPN4-212ENST00000488896 PCF11O94913 1555 aaKnown RBP0.5□□□□□ -2.33
PTPN4-212ENST00000488896 CEP164Q9UPV0 1460 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 IGLV3-32A0A0A0MS00 114 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 C3orf85A0A1B0GTC6 90 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 NUPR2A6NF83 97 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 JMJD7-PLA2G4BH0Y9G9 81 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 IFNA21P01568 189 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 IGLV1-51P01701 117 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 COX7CP15954 63 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 RPL35P42766 123 aaKnown RBP0.5□□□□□ -2.33
PTPN4-212ENST00000488896 FXYD4P59646 89 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 MIR22HGQ0VDD5 57 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 NEDD8Q15843 81 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 SPATA45Q537H7 98 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 HAGHLQ6PII5 290 aaPredicted RBP0.5□□□□□ -2.33
PTPN4-212ENST00000488896 PATE2Q6UY27 113 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms