RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 IL36RNQ9UBH0 155 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 ANKHD1Q8IWZ3 2542 aaKnown RBP6.12□□□□□ -1.43
USP4-211ENST00000485450 ABCA2Q9BZC7 2435 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 TACC2O95359 2948 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 IGHV4-31P0DP07 118 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 VGLL1Q99990 258 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.12□□□□□ -1.43
USP4-211ENST00000485450 SMIM9A6NGZ8 99 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 LCNL1Q6ZST4 164 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 TEX45Q8NA69 505 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 RAB37Q96AX2 223 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 ZFHX3Q15911 3703 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 MFAP2P55001 183 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 ETDBQ3ZM63 59 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 NHLRC2Q8NBF2 726 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 OR9G4Q8NGQ1 327 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 FAM234AQ9H0X4 552 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 KCNS2Q9ULS6 477 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 POLDIP2Q9Y2S7 368 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 RTTNQ86VV8 2226 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 ITPR2Q14571 2701 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 J3QLI3 93 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 TNFRSF1AP19438 455 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 RPS16P62249 146 aaKnown RBP6.11□□□□□ -1.43
USP4-211ENST00000485450 NFE4Q86UQ8 179 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 OR4X2Q8NGF9 303 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 AJUBAQ96IF1 538 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 IGF2BP2-AS1Q96M15 143 aa6.11□□□□□ -1.43
USP4-211ENST00000485450 IGHV4-30-2A0A087WSY4 118 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 CENPVL3A0A0U1RRI6 287 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 C15orf62A8K5M9 175 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 IGHV3-7P01780 117 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 COL8A2P25067 703 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 DLX6P56179 175 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 KLRD1Q13241 179 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 ATP5L2Q7Z4Y8 100 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 PIP4P2Q8N4L2 257 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 NUP35Q8NFH5 326 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 PIMREGQ9BSJ6 248 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 DNAH3Q8TD57 4116 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 SYNGR1O43759 233 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 FGF12P61328 243 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 FAM168AQ92567 244 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 MGST2Q99735 147 aa6.1□□□□□ -1.43
USP4-211ENST00000485450 MCRIP2Q9BUT9 160 aaKnown RBP6.1□□□□□ -1.43
USP4-211ENST00000485450 ANKRD17O75179 2603 aaKnown RBP6.1□□□□□ -1.43
USP4-211ENST00000485450 A0A1B0GXF2 115 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 J3QT63 122 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 BCL3P20749 454 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 TREML4Q6UXN2 200 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 FAM231DQ6ZW35 169 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 MOB1BQ7L9L4 216 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 SYT8Q8NBV8 401 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 CYSLTR1Q9Y271 337 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 A0A1W2PRD5 423 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 A0A1W2PRF3 423 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 A0A1W2PRM7 423 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 PAX8Q06710 450 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 TMEM78Q5T7P6 136 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 MIC13Q5XKP0 118 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 Q8IYB0 196 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 GTSF1Q8WW33 167 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 KIR2DL4Q99706 377 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 RTL8AQ9BWD3 113 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 IDI2-AS1Q9NZ38 188 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 OR1A1Q9P1Q5 309 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 INSIG2Q9Y5U4 225 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 SVEP1Q4LDE5 3571 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 LRRK2Q5S007 2527 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 PRSS29PA6NIE9 313 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 FOXH1O75593 365 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 SMIM13P0DJ93 91 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 CGB3P0DN86 165 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 CGB7P0DN87 165 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 SMCPP49901 116 aaPredicted RBP6.09□□□□□ -1.43
USP4-211ENST00000485450 WFDC11Q8NEX6 87 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 ICE1Q9Y2F5 2266 aa6.09□□□□□ -1.43
USP4-211ENST00000485450 LOC107984640A0A0U1RRK4 108 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 G6PCP35575 357 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 TNFAIP6P98066 277 aaPredicted RBP6.08□□□□□ -1.44
USP4-211ENST00000485450 C4orf48Q5BLP8 95 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 C8orf31Q8N9H6 132 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 ADTRPQ96IZ2 230 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 hADV38S2A0JD32 116 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 LINC01548A6NM66 108 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 F8WDY8 70 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 HSPB6O14558 160 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 SRD5A1P18405 259 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 Q6P435 159 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 DRAM1Q8N682 238 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 PIGCQ92535 297 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 GAFA1Q96PS6 74 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 SSBP3Q9BWW4 388 aaPredicted RBP6.08□□□□□ -1.44
USP4-211ENST00000485450 SLC25A10Q9UBX3 287 aaPredicted RBP6.08□□□□□ -1.44
USP4-211ENST00000485450 CENPEQ02224 2701 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 GAGE12JA6NER3 117 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 NDUFS7O75251 213 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 GAGE7O76087 117 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 GAGE12FP0CL80 117 aa6.08□□□□□ -1.44
USP4-211ENST00000485450 GAGE12GP0CL81 117 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms