RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 SELENOHQ8IZQ5 122 aaKnown RBP4.84□□□□□ -1.63
SF3B1-209ENST00000479532 OR1L8Q8NGR8 309 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 SGMS2Q8NHU3 365 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 SRSF12Q8WXF0 261 aaKnown RBP4.84□□□□□ -1.63
SF3B1-209ENST00000479532 DPF1Q92782 380 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 LSM10Q969L4 123 aaKnown RBP4.84□□□□□ -1.63
SF3B1-209ENST00000479532 SEC22AQ96IW7 307 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 MS4A10Q96PG2 267 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 HSPB9Q9BQS6 159 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 SRSF8Q9BRL6 282 aaKnown RBP4.84□□□□□ -1.63
SF3B1-209ENST00000479532 SDF2L1Q9HCN8 221 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 ENY2Q9NPA8 101 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 ZNF355PQ9NSJ1 428 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 OR51B2Q9Y5P1 312 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 MXRA5Q9NR99 2828 aa4.84□□□□□ -1.63
SF3B1-209ENST00000479532 CUBNO60494 3623 aa4.84□□□□□ -1.64
SF3B1-209ENST00000479532 C15orf61A6NNL5 157 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 TMEM250H0YL14 139 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 FCN1O00602 326 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 NDUFB8O95169 186 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 SCGB1D1O95968 90 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 IFNA1P01562 189 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 IGKV1-39P01597 117 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 IGKV1D-39P04432 117 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 OR10J4P0C629 311 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 OR13C7P0DN81 318 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 CRIP2P52943 208 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 ELLP55199 621 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 PROK1P58294 105 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 SUPT4H1P63272 117 aaKnown RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 BAXQ07812 192 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 PMCHL1Q16048 86 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 PDZD11Q5EBL8 140 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 CXorf66Q5JRM2 361 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 MRPL54Q6P161 138 aaKnown RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 KCNIP4Q6PIL6 250 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 LRTM2Q8N967 370 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 OR5AU1Q8NGC0 362 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 OR51G1Q8NGK1 321 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 OR1L6Q8NGR2 347 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 OR5B12Q96R08 314 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 FAM103A1Q9BTL3 118 aaKnown RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 C20orf24Q9BUV8 137 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 HINT2Q9BX68 163 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 QTRT1Q9BXR0 403 aaKnown RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 PLEKHA3Q9HB20 300 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 NAT8Q9UHE5 227 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 LINC00527Q9UJ94 153 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 FOXA2Q9Y261 457 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-209ENST00000479532 ZNF257Q9Y2Q1 563 aa4.83□□□□□ -1.64
SF3B1-209ENST00000479532 TRBV9A0A0B4J1U6 114 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 H3BUA1 57 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 AGPAT2O15120 278 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 HMGB3O15347 200 aaKnown RBP4.82□□□□□ -1.64
SF3B1-209ENST00000479532 PITX3O75364 302 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 IGKV1-5P01602 117 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 PRH1P02810 166 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 OR9G9P0C7N8 305 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 SLC25A6P12236 298 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 DEFA4P12838 97 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 HSPE1P61604 102 aaKnown RBP4.82□□□□□ -1.64
SF3B1-209ENST00000479532 ERHP84090 104 aaKnown RBP4.82□□□□□ -1.64
SF3B1-209ENST00000479532 NDPQ00604 133 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 SPSB3Q6PJ21 355 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 NIT1Q86X76 327 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 FAM110DQ8TAY7 271 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-209ENST00000479532 TAF15Q92804 592 aaKnown RBP eCLIP4.82□□□□□ -1.64
SF3B1-209ENST00000479532 OR10C1Q96KK4 312 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 TMEM14BQ9NUH8 114 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 THYN1Q9P016 225 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 CACNG5Q9UF02 275 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 TSSC4Q9Y5U2 329 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-209ENST00000479532 C2CD3Q4AC94 2353 aa4.82□□□□□ -1.64
SF3B1-209ENST00000479532 NIPBLQ6KC79 2804 aaeCLIP4.81□□□□□ -1.64
SF3B1-209ENST00000479532 TRAV3A0A0B4J244 114 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 A0A0G2JLM5 398 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 TEX50A0A1B0GTY4 177 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 C13orf42A0A1B0GVH6 325 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 TCRBV4S1A1TA0A5B7 111 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 LINC01548A6NM66 108 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 CEBPZOSA8MTT3 80 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 G3V318 75 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 G3V4G9 280 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 ST8SIA3O43173 380 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 IGHG4P01861 327 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 P0C879 139 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 IGLC2P0DOY2 106 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 IGLC3P0DOY3 106 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 HNRNPA3P51991 378 aaKnown RBP4.81□□□□□ -1.64
SF3B1-209ENST00000479532 SUB1P53999 127 aaKnown RBP eCLIP4.81□□□□□ -1.643e-8■■■□□ 16
SF3B1-209ENST00000479532 YPEL3P61236 119 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-209ENST00000479532 PRCDQ00LT1 54 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 Q0VG73 95 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 ANKRD55Q3KP44 614 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 ANXA2RQ3ZCQ2 193 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 C10orf55Q5SWW7 151 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 SAMD13Q5VXD3 122 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 ZNF343Q6P1L6 599 aa4.81□□□□□ -1.64
SF3B1-209ENST00000479532 LYZL2Q7Z4W2 148 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms