RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 NCBP2LA6PVI3 153 aaKnown RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 CELA2AP08217 269 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 FOXG1P55316 489 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 SRSF9Q13242 221 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS50-210ENST00000471188 CT83Q5H943 113 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 ZFP2Q6ZN57 461 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 SLC25A48Q6ZT89 311 aaKnown RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 GOLT1AQ6ZVE7 132 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 Q8IYB0 196 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 SMRP1Q8NCR6 262 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 NFAM1Q8NET5 270 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 C8orf46Q8TAG6 207 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 AJUBAQ96IF1 538 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 OBP2BQ9NPH6 170 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 PRNDQ9UKY0 176 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 KLF12Q9Y4X4 402 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 MUC22E2RYF6 1773 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 A0A087WX48 190 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 IGLV3-32A0A0A0MS00 114 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 TRGV8A0A0C4DH27 118 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 TMEM213A2RRL7 107 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 RHODO00212 210 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 FCN3O75636 299 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 DPM2O94777 84 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 NDUFA3O95167 84 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 LEPP41159 167 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 EIF4EBP1Q13541 118 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 TWIST1Q15672 202 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 MRPL23Q16540 153 aaKnown RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 TBC1D28Q2M2D7 210 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 SCGB1D4Q6XE38 83 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 MAPKAPK5-AS1Q8N8E1 139 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 CARD19Q96LW7 228 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 SPXQ9BT56 116 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 PRSS22Q9GZN4 317 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 GFRA4Q9GZZ7 299 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 COL5A1P20908 1838 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 PRR14LQ5THK1 2151 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 TPRP12270 2363 aaKnown RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 PROP1O75360 226 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 TNFRSF1AP19438 455 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 GLRXP35754 106 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 MSMPQ1L6U9 139 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 LYRM7Q5U5X0 104 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 KRTAP19-1Q8IUB9 90 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 ANKRD29Q8N6D5 301 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 OR1L8Q8NGR8 309 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 FXYD5Q96DB9 178 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 FMC1Q96HJ9 113 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 DEFB118Q96PH6 123 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 SPRY4Q9C004 299 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 IFI27L2Q9H2X8 130 aa3.38□□□□□ -1.87
VPS50-210ENST00000471188 CHCHD2Q9Y6H1 151 aaPredicted RBP3.38□□□□□ -1.87
VPS50-210ENST00000471188 FREM2Q5SZK8 3169 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 TRIOO75962 3097 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 PCSK5Q92824 1860 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 C19orf71A6NCJ1 209 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 LILRA5A6NI73 299 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 CRLF1O75462 422 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 TCRAP04437 139 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 LIFP15018 202 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 MPV17P39210 176 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 MEOX1P50221 254 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 CD69Q07108 199 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 KRTAP27-1Q3LI81 207 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 C3orf36Q3SXR2 165 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 C5orf47Q569G3 176 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 PLXDC1Q8IUK5 500 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 VWCEQ96DN2 955 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 RASL11BQ9BPW5 248 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 MLST8Q9BVC4 326 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 Q9H3A6 140 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 ZNF492Q9P255 531 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 MRPS17Q9Y2R5 130 aaKnown RBP3.37□□□□□ -1.87
VPS50-210ENST00000471188 U3KQE9 123 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 NPYP01303 97 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 EMP1P54849 157 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 ERHP84090 104 aaKnown RBP3.37□□□□□ -1.87
VPS50-210ENST00000471188 Q6ZQT7 251 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 Q71RC1 249 aaPredicted RBP3.37□□□□□ -1.87
VPS50-210ENST00000471188 WDR86Q86TI4 376 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 RND1Q92730 232 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 AAMDCQ9H7C9 122 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 HHLA3Q9XRX5 114 aa3.37□□□□□ -1.87
VPS50-210ENST00000471188 IGHV3-21A0A0B4J1V1 117 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 CENPVL3A0A0U1RRI6 287 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 ZNF503-AS2A6NEH8 195 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 SRRM4A7MD48 611 aaKnown RBP3.36□□□□□ -1.87
VPS50-210ENST00000471188 H7C2G1 150 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 DUX1O43812 170 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 HLA-DRB4P13762 266 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 SRD5A1P18405 259 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 TNFRSF4P43489 277 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 SRSF1Q07955 248 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS50-210ENST00000471188 TMEM155Q4W5P6 130 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 MORN3Q6PF18 240 aaPredicted RBP3.36□□□□□ -1.87
VPS50-210ENST00000471188 EXOC3-AS1Q8N2X6 119 aa3.36□□□□□ -1.87
VPS50-210ENST00000471188 MRPL35Q9NZE8 188 aaKnown RBP3.36□□□□□ -1.87
VPS50-210ENST00000471188 PROCRQ9UNN8 238 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms