RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PMS2P5A8MQ11 134 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 LYRM9A8MSI8 78 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 CCSO14618 274 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 PLP1P60201 277 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 PSG3Q16557 428 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 LCN15Q6UWW0 184 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 AMTNQ6UX39 209 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 Q6ZRG5 221 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 BPIFA4PQ86YQ2 179 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 GGACTQ9BVM4 153 aa12.47□□□□□ -0.41
COL7A1-206ENST00000466591 FRAS1Q86XX4 4008 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 TRAV6A0A075B6T7 132 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 A0A087X0K7 114 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 PRSS29PA6NIE9 313 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 AGPAT2O15120 278 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 CXCL3P19876 107 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 C10orf113Q5VZT2 155 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 TMEM256Q8N2U0 113 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 C15orf53Q8NAA6 179 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 OR10J6PQ8NGY7 276 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 RPUSD4Q96CM3 377 aaKnown RBP12.46□□□□□ -0.41
COL7A1-206ENST00000466591 SLC50A1Q9BRV3 221 aa12.46□□□□□ -0.41
COL7A1-206ENST00000466591 F5H768 121 aa12.45□□□□□ -0.42
COL7A1-206ENST00000466591 LYRM1O43325 122 aa12.45□□□□□ -0.42
COL7A1-206ENST00000466591 MBPP02686 304 aaPredicted RBP12.45□□□□□ -0.42
COL7A1-206ENST00000466591 SNRPCP09234 159 aaKnown RBP12.45□□□□□ -0.42
COL7A1-206ENST00000466591 CXCL2P19875 107 aa12.45□□□□□ -0.42
COL7A1-206ENST00000466591 S100A10P60903 97 aa12.45□□□□□ -0.42
COL7A1-206ENST00000466591 C7orf66A4D0T2 115 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 A8MTW9 85 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 K7EPK0 472 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 PRB4P10163 310 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-206ENST00000466591 BTCP35070 178 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 CDKN1BP46527 198 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 CAMLGP49069 296 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 RNF212Q495C1 297 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 C16orf74Q96GX8 76 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 C17orf77Q96MU5 243 aa12.44□□□□□ -0.42
COL7A1-206ENST00000466591 CRXO43186 299 aaPredicted RBP12.43□□□□□ -0.42
COL7A1-206ENST00000466591 NUDT3O95989 172 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 PRM2P04554 102 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 TSPOP30536 169 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 TAS2R60P59551 318 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 LGALS9BQ3B8N2 356 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 CCDC28AQ8IWP9 274 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 OR1L4Q8NGR5 311 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 SDHCQ99643 169 aaPredicted RBP12.43□□□□□ -0.42
COL7A1-206ENST00000466591 NUDT15Q9NV35 164 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 VPS13DQ5THJ4 4388 aa12.43□□□□□ -0.42
COL7A1-206ENST00000466591 DNAH10Q8IVF4 4471 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 H3BTX0 84 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 CST7O76096 145 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 TCRBP04435 133 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 ATP5G1P05496 136 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 ATP5G3P48201 142 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 BAXQ07812 192 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 PATE2Q6UY27 113 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 STX12Q86Y82 276 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 ZNF431Q8TF32 576 aaPredicted RBP12.42□□□□□ -0.42
COL7A1-206ENST00000466591 PFDN5Q99471 154 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 UQCC1Q9NVA1 299 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 NDUFA13Q9P0J0 144 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 PXMP4Q9Y6I8 212 aa12.42□□□□□ -0.42
COL7A1-206ENST00000466591 HBG1P69891 147 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 HBG2P69892 147 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 ARL16Q0P5N6 197 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 NRARPQ7Z6K4 114 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 C12orf45Q8N5I9 185 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-206ENST00000466591 MGST2Q99735 147 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 SEC22CQ9BRL7 303 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 DNAJC4Q9NNZ3 241 aa12.41□□□□□ -0.42
COL7A1-206ENST00000466591 ZNF331Q9NQX6 463 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-206ENST00000466591 TIMM8BQ9Y5J9 83 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-206ENST00000466591 UBE2L5PA0A1B0GUS4 154 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 FAM240BA0A1B0GVZ2 78 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 H7BYZ3 331 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 J3KRW8 73 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 AZU1P20160 251 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 CLINT1Q14677 625 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 FCN2Q15485 313 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 C2orf50Q96LR7 162 aa12.4□□□□□ -0.42
COL7A1-206ENST00000466591 FAM24AA6NFZ4 105 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 H2AFB2P0C5Z0 115 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 CCL18P55774 89 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 OPCMLQ14982 345 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 GUK1Q16774 197 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 C1orf134Q5TEV5 83 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 MZT2BQ6NZ67 158 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 ZNF493Q6ZR52 646 aa12.39□□□□□ -0.43
COL7A1-206ENST00000466591 NOP10Q9NPE3 64 aaKnown RBP12.39□□□□□ -0.43
COL7A1-206ENST00000466591 CBY3A6NI87 242 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 SNURFLB1AK76 121 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 PLA2G10O15496 165 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 S100A11P31949 105 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 LEPP41159 167 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 FAM3BP58499 235 aaPredicted RBP12.38□□□□□ -0.43
COL7A1-206ENST00000466591 MIC13Q5XKP0 118 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 TMEM263Q8WUH6 116 aaKnown RBP12.38□□□□□ -0.43
COL7A1-206ENST00000466591 C20orf144Q9BQM9 153 aa12.38□□□□□ -0.43
COL7A1-206ENST00000466591 CCDC32Q9BV29 185 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 1784 ms