RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 A0A0U1RRA0 63 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 TMEM158Q8WZ71 300 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 MBD3L4A6NDZ8 208 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 MBD3L3A6NE82 208 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 MBD3L5A6NJ08 208 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 ZC2HC1BQ5TFG8 222 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 MBD3L2Q8NHZ7 208 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 CST9LQ9H4G1 147 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 MGAMO43451 1857 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 EFNA4P52798 201 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 DEFB104AQ8WTQ1 72 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 WFDC12Q8WWY7 111 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 BUB1B-PAK6H3BSN5 160 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 C5orf64Q2M2E5 130 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 COA6Q5JTJ3 125 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 Q8TAT8 98 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 FANCMQ8IYD8 2048 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 SMKR1H3BMG3 65 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 UNQ6494/PRO21346Q6UXR6 183 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 C15orf32Q32M92 178 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 POLEQ07864 2286 aa15.41■□□□□ 0.06
CCDC88B-204ENST00000463837 M0R1W7 72 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 CYYR1Q96J86 154 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 M0R2P5 195 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 AMN1Q8IY45 258 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 TRBV7-1A0A0A6YYK4 115 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 VCYO14598 125 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 ZNF562Q6V9R5 426 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 HAPLN4Q86UW8 402 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 STPG4Q8N801 248 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 NDUFA4L2Q9NRX3 87 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 A0A1W2PRX2 142 aa15.4■□□□□ 0.06
CCDC88B-204ENST00000463837 TRAV41A0A0B4J266 112 aa15.39■□□□□ 0.05
CCDC88B-204ENST00000463837 MORN3Q6PF18 240 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-204ENST00000463837 PRSS46E5RG02 174 aa15.39■□□□□ 0.05
CCDC88B-204ENST00000463837 IGKV1-16P04430 117 aa15.39■□□□□ 0.05
CCDC88B-204ENST00000463837 ZNF524Q96C55 264 aa15.39■□□□□ 0.05
CCDC88B-204ENST00000463837 ARMS2P0C7Q2 107 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 RSPO1Q2MKA7 263 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 ZNF672Q499Z4 452 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 DOCK11Q5JSL3 2073 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 FER1L5A0AVI2 2057 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 C9orf118A6NHY6 69 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 Q8NFD4 153 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 TMEM155Q4W5P6 130 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 SRD5A1P18405 259 aa15.38■□□□□ 0.05
CCDC88B-204ENST00000463837 TRGV2A0A075B6R0 118 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 LINC00527Q9UJ94 153 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 A0A1W2PPI3 338 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 C3orf36Q3SXR2 165 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 FAM104BQ5XKR9 115 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 ADAMTSL5Q6ZMM2 481 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 GGTLC3B5MD39 225 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 PYGO2Q9BRQ0 406 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 SPANXA1Q9NS26 97 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 SRSF6Q13247 344 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 IGFL4Q6B9Z1 124 aa15.37■□□□□ 0.05
CCDC88B-204ENST00000463837 ABCA1O95477 2261 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 WISP1O95388 367 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 STHQ8IWL8 128 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 TNFRSF6BO95407 300 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 COX8AP10176 69 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 GATA4P43694 442 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 NPC2P61916 151 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 TMEM8BA6NDV4 472 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 PGPEP1Q9NXJ5 209 aa15.36■□□□□ 0.05
CCDC88B-204ENST00000463837 CMC4P56277 68 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 SLAQ13239 276 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 LGALS9BQ3B8N2 356 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 LGALS9CQ6DKI2 356 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 ZNF833PQ6ZTB9 187 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 VMO1Q7Z5L0 202 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 ZNF114Q8NC26 417 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 Q8TCH9 128 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 TMEM14CQ9P0S9 112 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 TRAV40A0A0B4J280 105 aa15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 SSBP2P81877 361 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-204ENST00000463837 KIR2DL5BA0A0G2JN68 375 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 KIR2DL5BA0A0G2JPC4 375 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 B4DSR2 109 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 VWC2Q2TAL6 325 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 KIR2DL5AQ8N109 375 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 PROK2Q9HC23 129 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 IGLL1P15814 213 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 RNF166Q96A37 237 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 IGHV1-24A0A0C4DH33 117 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 CFAP161Q6P656 301 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 MSRB2Q9Y3D2 182 aa15.34■□□□□ 0.05
CCDC88B-204ENST00000463837 WIPF2Q8TF74 440 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-204ENST00000463837 NDUFB8O95169 186 aa15.33■□□□□ 0.04
CCDC88B-204ENST00000463837 HTN3P15516 51 aa15.33■□□□□ 0.04
CCDC88B-204ENST00000463837 ZNF474Q6S9Z5 364 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-204ENST00000463837 CSTL1Q9H114 145 aa15.33■□□□□ 0.04
CCDC88B-204ENST00000463837 CACNA1BQ00975 2339 aa15.33■□□□□ 0.04
CCDC88B-204ENST00000463837 GNLYP22749 145 aa15.32■□□□□ 0.04
CCDC88B-204ENST00000463837 Q8N8P6 123 aa15.32■□□□□ 0.04
CCDC88B-204ENST00000463837 TRBV19A0A075B6N1 114 aa15.32■□□□□ 0.04
CCDC88B-204ENST00000463837 Q6ZS92 163 aa15.32■□□□□ 0.04
CCDC88B-204ENST00000463837 LCNL1Q6ZST4 164 aa15.32■□□□□ 0.04
CCDC88B-204ENST00000463837 FAM223BA6NKX1 122 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms