RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 OR10P1Q8NGE3 313 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 MS4A6EQ96DS6 147 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 RBMXL1Q96E39 390 aaKnown RBP4.15□□□□□ -1.75
VPS41-209ENST00000457055 PGLYRP4Q96LB8 373 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 PMCHL2Q9BQD1 86 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 SRXN1Q9BYN0 137 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 PLA2G2FQ9BZM2 168 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 COQ4Q9Y3A0 265 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 ADAMTS9Q9P2N4 1935 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 ACACAQ13085 2346 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 TRBV24-1A0A075B6N3 115 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 LOC389332A0A1B0GUA5 103 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 A0A1W2PPM0 123 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 LGALS9O00182 355 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 FFAR1O14842 300 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 NDUFB3O43676 98 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 SCRG1O75711 98 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 RBP4P02753 201 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 TCRAP04437 139 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 BTCP35070 178 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 FAM219BQ5XKK7 198 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 UNQ9165/PRO28630Q6UXU0 137 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 DPPA3Q6W0C5 159 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 RFLNAQ6ZTI6 216 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 H2AFVQ71UI9 128 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 TMEM75Q8N9X5 138 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 WFDC11Q8NEX6 87 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 MRPL30Q8TCC3 161 aaKnown RBP4.14□□□□□ -1.75
VPS41-209ENST00000457055 CNRIP1Q96F85 164 aaPredicted RBP4.14□□□□□ -1.75
VPS41-209ENST00000457055 ZNF799Q96GE5 643 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 SLC39A9Q9NUM3 307 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 TMEM242Q9NWH2 141 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 SERP1Q9Y6X1 66 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 V9GY05 133 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 ITPR3Q14573 2671 aa4.14□□□□□ -1.75
VPS41-209ENST00000457055 CELSR3Q9NYQ7 3312 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 ANKRD17O75179 2603 aaKnown RBP4.13□□□□□ -1.75
VPS41-209ENST00000457055 PTPRBP23467 1997 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 A0A0G2JND7 137 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 LOC107986453A0A1B0GWG9 222 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 GRIFINA4D1Z8 144 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 EPM2AB3EWF7 344 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 K7N7A8 449 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 M0R381 172 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 GNGT2O14610 69 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 NDUFB2O95178 105 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 LINC00869P0C866 280 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 HLA-DRB4P13762 266 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 TAS2R19P59542 299 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 LGALS9BQ3B8N2 356 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 PYDC2Q56P42 97 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 SPRNQ5BIV9 151 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 BPIFA4PQ86YQ2 179 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 MPLKIPQ8TAP9 179 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 TOMM6Q96B49 74 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 FAM3DQ96BQ1 224 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 VGLL1Q99990 258 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 SHANK2-AS3Q9BTD1 123 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 SLC35B3Q9H1N7 401 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 BCL2L10Q9HD36 194 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 Q9Y3F1 56 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 HLA-DRB4X5D2U9 266 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 SPTA1P02549 2419 aa4.13□□□□□ -1.75
VPS41-209ENST00000457055 CCDC88CQ9P219 2028 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 KALRNO60229 2985 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 PI4KAP42356 2102 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 ABCA7Q8IZY2 2146 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 LAMA4Q16363 1823 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 GOLGA4Q13439 2230 aaKnown RBP4.12□□□□□ -1.75
VPS41-209ENST00000457055 TRBV20OR9-2A0A075B6H5 130 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 TRAV41A0A0B4J266 112 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 ZFP92A6NM28 416 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 C12orf77C9JDV5 145 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 H3BT86 120 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 PSPHP1O15172 72 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 CRISP2P16562 243 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 GATA2P23769 480 aaPredicted RBP4.12□□□□□ -1.75
VPS41-209ENST00000457055 MFAP2P55001 183 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 LSM3P62310 102 aaKnown RBP4.12□□□□□ -1.75
VPS41-209ENST00000457055 PRR3P79522 188 aaKnown RBP4.12□□□□□ -1.75
VPS41-209ENST00000457055 ZNF79Q15937 498 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 FOXL2NBQ6ZUU3 175 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 FAM57BQ71RH2 274 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 NOTCH2NLQ7Z3S9 236 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 FAM19A3Q7Z5A8 133 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 TEN1Q86WV5 123 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 MKXQ8IYA7 352 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 RPP25LQ8N5L8 163 aaKnown RBP4.12□□□□□ -1.75
VPS41-209ENST00000457055 ZIC4Q8N9L1 334 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 C11orf72Q8NBR9 251 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 PPDPFLQ8WWR9 84 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 PRELID3AQ96N28 172 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 CCL13Q99616 98 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 C20orf78Q9BR46 151 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 FAM60AQ9NP50 221 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 KLK13Q9UKR3 277 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 CFAP46Q8IYW2 2715 aa4.12□□□□□ -1.75
VPS41-209ENST00000457055 ANK1P16157 1881 aa4.11□□□□□ -1.75
VPS41-209ENST00000457055 CACNA1EQ15878 2313 aa4.11□□□□□ -1.75
VPS41-209ENST00000457055 SPTAN1Q13813 2472 aaKnown RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms