RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ZNF474Q6S9Z5 364 aaPredicted RBP6.33□□□□□ -1.4
NEDD9-204ENST00000448183 ZNF562Q6V9R5 426 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 LINC00479Q96M42 142 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.33□□□□□ -1.44e-7■■■□□ 16.4
NEDD9-204ENST00000448183 FAM231BA6NCW3 169 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 SMKR1H3BMG3 65 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 ZNF688P0C7X2 276 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 VMO1Q7Z5L0 202 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 CST9LQ9H4G1 147 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 PDE6HQ13956 83 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 MLANAQ16655 118 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 MAJINQ3KP22 176 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 C20orf204Q6ZNR8 217 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 STPG4Q8N801 248 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 IGKV1D-17A0A075B6S4 117 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 TRBV7-1A0A0A6YYK4 115 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 ARMS2P0C7Q2 107 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 GAFA1Q96PS6 74 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 ZNF492Q9P255 531 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 A0A087WX48 190 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 MYMXA0A1B0GTQ4 84 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 FHL1Q13642 323 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 DTX2Q86UW9 622 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 PRADC1Q9BSG0 188 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 LIME1Q9H400 295 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 A0A1B0GUS0 222 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 C9JAW5 83 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 ITGB1BP1O14713 200 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 IGHV2-70P01814 119 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 IGLC2P0DOY2 106 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 IGLC3P0DOY3 106 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 ZNF415Q09FC8 603 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 CT83Q5H943 113 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 OVOL2Q9BRP0 275 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 USF3Q68DE3 2245 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 A0A0G2JMZ2 1700 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 LRRC37A2A6NM11 1700 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 SHANK2-AS3Q9BTD1 123 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 TRAV8-3A0A0A6YYJ7 113 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 IGKV1-6A0A0C4DH72 117 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 BUB1B-PAK6H3BSN5 160 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 CMC4P56277 68 aaPredicted RBP6.32□□□□□ -1.4
NEDD9-204ENST00000448183 KLRD1Q13241 179 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 LY6G5BQ8NDX9 201 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 DEFB104AQ8WTQ1 72 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 TIMM21Q9BVV7 248 aa6.32□□□□□ -1.4
NEDD9-204ENST00000448183 FCN3O75636 299 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 IGKV1-16P04430 117 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 CSRP1P21291 193 aaKnown RBP6.31□□□□□ -1.4
NEDD9-204ENST00000448183 NDPQ00604 133 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 TMEM219Q86XT9 240 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 SRSF8Q9BRL6 282 aaKnown RBP6.31□□□□□ -1.4
NEDD9-204ENST00000448183 LAMTOR3Q9UHA4 124 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 GPR179Q6PRD1 2367 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 IGHV3-73A0A0B4J1V6 119 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 IGHV2-5P01817 119 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 YPEL3P61236 119 aaPredicted RBP6.31□□□□□ -1.4
NEDD9-204ENST00000448183 IGFL4Q6B9Z1 124 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 C1orf159Q96HA4 380 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 SPANXA1Q9NS26 97 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 ANAPC10Q9UM13 185 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 SIP14410 1827 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 M0R1W7 72 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 B3GALT5-AS1P59052 145 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 C1orf122Q6ZSJ8 110 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 EFNA4P52798 201 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 C10orf91Q5T1B1 145 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 DNAJC30Q96LL9 226 aa6.31□□□□□ -1.4
NEDD9-204ENST00000448183 TRGV1A0A0A0MS02 117 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 LEPROTO15243 131 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 PAX9P55771 341 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 C3orf36Q3SXR2 165 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 NEGR1Q7Z3B1 354 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 PRIMA1Q86XR5 153 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 ZNF48Q96MX3 618 aaPredicted RBP6.3□□□□□ -1.4
NEDD9-204ENST00000448183 A0A1W2PPI3 338 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 Q0VFX4 171 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 C6orf226Q5I0X4 101 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 FAM104BQ5XKR9 115 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 USMG5Q96IX5 58 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 DTX1Q86Y01 620 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 TMEM105Q8N8V8 129 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 C1orf147Q96MC9 270 aaPredicted RBP6.3□□□□□ -1.4
NEDD9-204ENST00000448183 EDA2RQ9HAV5 297 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 KLF12Q9Y4X4 402 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 TRBV20-1A0A075B6N2 111 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 TMEM213A2RRL7 107 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 MDS2Q8NDY4 140 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 HS3ST6Q96QI5 342 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 SPXQ9BT56 116 aa6.3□□□□□ -1.4
NEDD9-204ENST00000448183 DOCK8Q8NF50 2099 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 C9orf118A6NHY6 69 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 ERCC8Q13216 396 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 Q6ZWC4 215 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 TMEM75Q8N9X5 138 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 CYYR1Q96J86 154 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 TMEM14BQ9NUH8 114 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 PRSS46E5RG02 174 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 H3BUX3 64 aa6.29□□□□□ -1.4
NEDD9-204ENST00000448183 CFHR2P36980 270 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms