RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 KCNIP4Q6PIL6 250 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 TMEM219Q86XT9 240 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 NPCDR1Q9BY65 106 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 IGHV7-81A0A0B4J1V7 117 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 FSHBP01225 129 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 FOXL1Q12952 345 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 TEPPQ6URK8 271 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 GTF2H5Q6ZYL4 71 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 RAX2Q96IS3 184 aa6.38□□□□□ -1.39
CCDC39-201ENST00000442201 ITPR2Q14571 2701 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 DEFA4P12838 97 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 NDPQ00604 133 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 LY6EQ16553 131 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 DEFB112Q30KQ8 113 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 TEX29Q8N6K0 151 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 C5orf56Q8N8D9 126 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 MBD3L1Q8WWY6 194 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 NPFFR1Q9GZQ6 430 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 A0A1B0GW15 77 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 GAGE12HA6NDE8 117 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 K7EP34 96 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 PLP1P60201 277 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 MLANAQ16655 118 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 PVRIGQ6DKI7 326 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 BCL6BQ8N143 479 aaPredicted RBP6.37□□□□□ -1.39
CCDC39-201ENST00000442201 NECAP1Q8NC96 275 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 WNT10AQ9GZT5 417 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 KCNIP2Q9NS61 270 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 LSM4Q9Y4Z0 139 aaKnown RBP6.37□□□□□ -1.39
CCDC39-201ENST00000442201 PDZD2O15018 2839 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 VPS13CQ709C8 3753 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 A6NDX4 124 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 RHOBP62745 196 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 MRPL54Q6P161 138 aaKnown RBP6.37□□□□□ -1.39
CCDC39-201ENST00000442201 C12orf54Q6X4T0 127 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 C19orf35Q6ZS72 473 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 C9orf139Q6ZV77 190 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 FNDC4Q9H6D8 234 aaPredicted RBP6.37□□□□□ -1.39
CCDC39-201ENST00000442201 THYN1Q9P016 225 aa6.37□□□□□ -1.39
CCDC39-201ENST00000442201 TRAV9-2A0A087WT02 112 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 MDFIC2A0A1B0GVS7 189 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 GAGE10A6NGK3 116 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 IGHG4P01861 327 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 MFAP2P55001 183 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 ADIRFQ15847 76 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 MPV17L2Q567V2 206 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 ERASQ7Z444 233 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 MGST2Q99735 147 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 DERL1Q9BUN8 251 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 RPRMQ9NS64 109 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 SS18L2Q9UHA2 77 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 ABCA1O95477 2261 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 CSPG4Q6UVK1 2322 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 ITPR3Q14573 2671 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 PLXNB1O43157 2135 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 PSMB11A5LHX3 300 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 NPIPB5A8MRT5 1133 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 SIGLECL1Q8N7X8 197 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 OR2T6Q8NHC8 308 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 GPR82Q96P67 336 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 GGTLC1Q9BX51 225 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 NRN1Q9NPD7 142 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 MRPL16Q9NX20 251 aaKnown RBP6.36□□□□□ -1.39
CCDC39-201ENST00000442201 CR1P17927 2039 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 ZANQ9Y493 2812 aa6.36□□□□□ -1.39
CCDC39-201ENST00000442201 TMEM250H0YL14 139 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 PDE6DO43924 150 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 NOTCH2Q04721 2471 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 COX19Q49B96 90 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 ASPHD1Q5U4P2 390 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 SGMS2Q8NHU3 365 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 TMUB1Q9BVT8 246 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 YAE1D1Q9NRH1 226 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 TRAV9-1A0A075B6T8 112 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 SH2D7A6NKC9 451 aaPredicted RBP6.35□□□□□ -1.39
CCDC39-201ENST00000442201 ATP6V0E1O15342 81 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 WIPF1O43516 503 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 IGHV3-48P01763 117 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 AMY1AP04745 511 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 EGR2P11161 476 aaPredicted RBP6.35□□□□□ -1.39
CCDC39-201ENST00000442201 KRTDAPP60985 99 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 RPL32P62910 135 aaKnown RBP6.35□□□□□ -1.39
CCDC39-201ENST00000442201 ACSM6Q6P461 480 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 TTC9CQ8N5M4 171 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 OR5A1Q8NGJ0 315 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 NPIPB3Q92617 1050 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 VSIRQ9H7M9 311 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 ERG28Q9UKR5 140 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 A0A1W2PPV4 95 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 IGHV4-59P01825 116 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 C3orf79P0CE67 100 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 MIC13Q5XKP0 118 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 SMIM7Q9BQ49 75 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 GNG13Q9P2W3 67 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 NAV3Q8IVL0 2385 aa6.35□□□□□ -1.39
CCDC39-201ENST00000442201 IGKV1OR2-108A0A075B7D4 117 aa6.34□□□□□ -1.39
CCDC39-201ENST00000442201 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.34□□□□□ -1.39
CCDC39-201ENST00000442201 MUC21A0A0G2JKD1 596 aa6.34□□□□□ -1.39
CCDC39-201ENST00000442201 MUC21A0A140T8X8 626 aa6.34□□□□□ -1.39
CCDC39-201ENST00000442201 GRIFINA4D1Z8 144 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms