RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 Q5PR19 223 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 K7ENP7 123 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 C3orf56Q8N813 242 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 DAZ1Q9NQZ3 744 aaKnown RBP13.9□□□□□ -0.18
PTPRF-209ENST00000438120 SAMD5Q5TGI4 173 aa13.89□□□□□ -0.19
PTPRF-209ENST00000438120 SSC4DQ8WTU2 575 aa13.89□□□□□ -0.19
PTPRF-209ENST00000438120 IGKV1-6A0A0C4DH72 117 aa13.89□□□□□ -0.19
PTPRF-209ENST00000438120 G3V318 75 aa13.89□□□□□ -0.19
PTPRF-209ENST00000438120 MSMBP08118 114 aa13.89□□□□□ -0.19
PTPRF-209ENST00000438120 FOXL2NBQ6ZUU3 175 aa13.89□□□□□ -0.19
PTPRF-209ENST00000438120 DIDO1Q9BTC0 2240 aaKnown RBP13.88□□□□□ -0.19
PTPRF-209ENST00000438120 VCYO14598 125 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 XCL2Q9UBD3 114 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 TRAV8-4A0A0B4J246 113 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 TMEM155Q4W5P6 130 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 HSD52Q0P140 79 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 C6orf226Q5I0X4 101 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 BCL6BQ8N143 479 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-209ENST00000438120 Q96MF0 132 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 IL17RELQ6ZVW7 336 aa13.88□□□□□ -0.19
PTPRF-209ENST00000438120 TMEM238C9JI98 176 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 ABCA1O95477 2261 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 A0A087X0K7 114 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 MTURNQ8N3F0 131 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 SPXQ9BT56 116 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 SPAG8Q99932 426 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-209ENST00000438120 IGHV3-16A0A0C4DH30 117 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 NDUFB8O95169 186 aa13.87□□□□□ -0.19
PTPRF-209ENST00000438120 Q86TA4 180 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 RNF166Q96A37 237 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-209ENST00000438120 SMPXQ9UHP9 88 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 GPR179Q6PRD1 2367 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 A8MWV9 139 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 C8orf49Q96NF6 230 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 KLK9Q9UKQ9 250 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 DOCK10Q96BY6 2186 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 GHRHP01286 108 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 Q6ZR03 302 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 SHANK2-AS3Q9BTD1 123 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 ARMS2P0C7Q2 107 aa13.86□□□□□ -0.19
PTPRF-209ENST00000438120 A0A1B0GW64 132 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 SPINK13Q1W4C9 94 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 LY6G6EA0A0G2JKS1 128 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 ZNF503-AS2A6NEH8 195 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 ATXN8Q156A1 80 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 U3KQA8 63 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 PI4KAP42356 2102 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 PKDREJQ9NTG1 2253 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 C3orf79P0CE67 100 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 DOCK7Q96N67 2140 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 REG4Q9BYZ8 158 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 USF3Q68DE3 2245 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 TNFSF13O75888 250 aa13.85□□□□□ -0.19
PTPRF-209ENST00000438120 TCF20Q9UGU0 1960 aaKnown RBP13.84□□□□□ -0.19
PTPRF-209ENST00000438120 MS4A6AQ9H2W1 248 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 DOCK8Q8NF50 2099 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 SSBP2P81877 361 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-209ENST00000438120 GAGE13Q4V321 117 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 RASL10AQ92737 203 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 SBF1O95248 1867 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 UBE2E1P51965 193 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 VWA8A3KMH1 1905 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 ZNF625Q96I27 306 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-209ENST00000438120 C1QTNF4Q9BXJ3 329 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 PROK2Q9HC23 129 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 LAMTOR3Q9UHA4 124 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 RNF114Q9Y508 228 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 GBF1Q92538 1859 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 TMEM213A2RRL7 107 aa13.84□□□□□ -0.19
PTPRF-209ENST00000438120 ZNF562Q6V9R5 426 aa13.83□□□□□ -0.19
PTPRF-209ENST00000438120 LIME1Q9H400 295 aa13.83□□□□□ -0.19
PTPRF-209ENST00000438120 NBASA2RRP1 2371 aa13.83□□□□□ -0.19
PTPRF-209ENST00000438120 Q6ZS49 121 aa13.83□□□□□ -0.2
PTPRF-209ENST00000438120 LYPD1Q8N2G4 141 aa13.83□□□□□ -0.2
PTPRF-209ENST00000438120 YLPM1P49750 1951 aaKnown RBP13.83□□□□□ -0.2
PTPRF-209ENST00000438120 PLEKHB2Q96CS7 222 aa13.83□□□□□ -0.2
PTPRF-209ENST00000438120 ABCA4P78363 2273 aa13.83□□□□□ -0.2
PTPRF-209ENST00000438120 INS-IGF2F8WCM5 200 aa13.83□□□□□ -0.2
PTPRF-209ENST00000438120 ZNF524Q96C55 264 aa13.83□□□□□ -0.2
PTPRF-209ENST00000438120 IGHV1-69DA0A0B4J2H0 117 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 IGHV1-69P01742 117 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 RASL11AQ6T310 242 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 C1orf122Q6ZSJ8 110 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 WDR86Q86TI4 376 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 FANCMQ8IYD8 2048 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 SPOCK3Q9BQ16 436 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 THSD7BQ9C0I4 1608 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 ZC2HC1BQ5TFG8 222 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 GAGE12JA6NER3 117 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 GAGE1Q13065 139 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 GAGE4Q13068 117 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 GAGE5Q13069 117 aa13.82□□□□□ -0.2
PTPRF-209ENST00000438120 FAM90A2PQ658T7 463 aa13.81□□□□□ -0.2
PTPRF-209ENST00000438120 SEC11AP67812 179 aa13.81□□□□□ -0.2
PTPRF-209ENST00000438120 SYS1-DBNDD2H3BUS1 97 aa13.81□□□□□ -0.2
PTPRF-209ENST00000438120 NDUFS8O00217 210 aa13.81□□□□□ -0.2
PTPRF-209ENST00000438120 FAM110DQ8TAY7 271 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-209ENST00000438120 TRAV12-2A0A075B6T6 113 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 ARFGEF3Q5TH69 2177 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 TPSG1Q9NRR2 321 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms