RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MYO9AB2RTY4 2548 aa16.34■□□□□ 0.21
PTPRF-207ENST00000436724 PGPA6NDG6 321 aa16.34■□□□□ 0.21
PTPRF-207ENST00000436724 HELTA6NFD8 242 aa16.34■□□□□ 0.21
PTPRF-207ENST00000436724 BPIFA4PQ86YQ2 179 aa16.34■□□□□ 0.21
PTPRF-207ENST00000436724 TRBV12-3P01733 135 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 KRTAP1-1Q07627 177 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 ZFAND3Q9H8U3 227 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 SLC17A3O00476 420 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 IGHV3-11P01762 117 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 HIST1H1EP10412 219 aaKnown RBP16.33■□□□□ 0.2
PTPRF-207ENST00000436724 CFHR3Q02985 330 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 C10orf99Q6UWK7 81 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 IL36BQ9NZH7 164 aa16.33■□□□□ 0.2
PTPRF-207ENST00000436724 MRPS12O15235 138 aaKnown RBP16.32■□□□□ 0.2
PTPRF-207ENST00000436724 IGLV1-40P01703 118 aa16.32■□□□□ 0.2
PTPRF-207ENST00000436724 CENPWQ5EE01 88 aa16.32■□□□□ 0.2
PTPRF-207ENST00000436724 SIGLECL1Q8N7X8 197 aa16.32■□□□□ 0.2
PTPRF-207ENST00000436724 Q9H3A6 140 aa16.32■□□□□ 0.2
PTPRF-207ENST00000436724 SLC25A5P05141 298 aaKnown RBP16.31■□□□□ 0.2
PTPRF-207ENST00000436724 IGLC2P0DOY2 106 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 RABAC1Q9UI14 185 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 RPH3ALQ9UNE2 315 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 TRAV34A0A0B4J273 112 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 PKIAP61925 76 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 EXOC3-AS1Q8N2X6 119 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 PRO1933Q9H354 126 aa16.31■□□□□ 0.2
PTPRF-207ENST00000436724 BMPR1BO00238 502 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 PEX7O00628 323 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 PRB4P10163 310 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-207ENST00000436724 OR5I1Q13606 314 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 OR4F17Q8NGA8 305 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 H3BUA1 57 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 GNG4P50150 75 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 LURAP1LQ8IV03 231 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 GBGT1Q8N5D6 347 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 SGK494Q96LW2 274 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 EPDR1Q9UM22 224 aa16.3■□□□□ 0.2
PTPRF-207ENST00000436724 TRBV19A0A075B6N1 114 aa16.29■□□□□ 0.2
PTPRF-207ENST00000436724 CLPSL1A2RUU4 121 aa16.29■□□□□ 0.2
PTPRF-207ENST00000436724 RAB9AP51151 201 aa16.29■□□□□ 0.2
PTPRF-207ENST00000436724 A0A1B0GUS0 222 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 ZNF207O43670 478 aaKnown RBP16.28■□□□□ 0.2
PTPRF-207ENST00000436724 GATCO43716 136 aaKnown RBP16.28■□□□□ 0.2
PTPRF-207ENST00000436724 NUPR1O60356 82 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 BRI3O95415 125 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 TMEM256Q8N2U0 113 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 TMEM18Q96B42 140 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 V9GYV3 84 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 TRAV9-1A0A075B6T8 112 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 IGHV3OR16-13A0A075B7E8 117 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 IGHV3-74A0A0B4J1X5 117 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 IGHV3-66A0A0C4DH42 116 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 GCGP01275 180 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 ARL3P36405 182 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 NHLRC2Q8NBF2 726 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 USMG5Q96IX5 58 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 ZNF702PQ9H963 129 aa16.28■□□□□ 0.2
PTPRF-207ENST00000436724 ISLRO14498 428 aa16.27■□□□□ 0.2
PTPRF-207ENST00000436724 DEFA6Q01524 100 aa16.27■□□□□ 0.2
PTPRF-207ENST00000436724 S100A7AQ86SG5 101 aa16.27■□□□□ 0.2
PTPRF-207ENST00000436724 OR8I2Q8N0Y5 310 aa16.27■□□□□ 0.2
PTPRF-207ENST00000436724 IGF2BP2-AS1Q96M15 143 aa16.27■□□□□ 0.2
PTPRF-207ENST00000436724 IGHV3-49A0A0A0MS15 119 aa16.27■□□□□ 0.19
PTPRF-207ENST00000436724 APOHP02749 345 aaPredicted RBP16.27■□□□□ 0.19
PTPRF-207ENST00000436724 ERVFC1-1P60608 527 aa16.27■□□□□ 0.19
PTPRF-207ENST00000436724 PRSS22Q9GZN4 317 aa16.27■□□□□ 0.19
PTPRF-207ENST00000436724 IGLV2-8P01709 118 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 FRMD6-AS1P0C7T7 363 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 CBLN1P23435 193 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 RELQ04864 619 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-207ENST00000436724 C5orf17Q8NAS9 161 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 OR4X2Q8NGF9 303 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 C14orf144Q96I85 54 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 YAE1D1Q9NRH1 226 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 ZNF580Q9UK33 172 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 CDC42EP3Q9UKI2 254 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 NF1P21359 2839 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 IGHG4P01861 327 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 PSMB8P28062 276 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 SIGLEC15Q6ZMC9 328 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 NPFFR1Q9GZQ6 430 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 OTORQ9NRC9 128 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 SMAD5-AS1Q9Y6J3 95 aa16.26■□□□□ 0.19
PTPRF-207ENST00000436724 MTORP42345 2549 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 CD5LO43866 347 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 DDTP30046 118 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 RPEL1Q2QD12 228 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 ZNF664Q8N3J9 261 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 ATP6V0BQ99437 205 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 OTOGQ6ZRI0 2925 aa16.25■□□□□ 0.19
PTPRF-207ENST00000436724 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.24■□□□□ 0.19
PTPRF-207ENST00000436724 TSTD3H0UI37 97 aa16.24■□□□□ 0.19
PTPRF-207ENST00000436724 BUB3O43684 328 aa16.24■□□□□ 0.19
PTPRF-207ENST00000436724 TCRAP04437 139 aa16.24■□□□□ 0.19
PTPRF-207ENST00000436724 UNQ9165/PRO28630Q6UXU0 137 aa16.24■□□□□ 0.19
PTPRF-207ENST00000436724 RPL7P18124 248 aaKnown RBP16.24■□□□□ 0.19
PTPRF-207ENST00000436724 ATG101Q9BSB4 218 aa16.24■□□□□ 0.19
PTPRF-207ENST00000436724 TP53TG3Q9ULZ0 132 aa16.24■□□□□ 0.19
PTPRF-207ENST00000436724 ANK3Q12955 4377 aaKnown RBP16.23■□□□□ 0.19
PTPRF-207ENST00000436724 ZNF705GA8MUZ8 300 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms