RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 TMSB15BA0A087X1C1 80 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 IGHV1-3A0A0C4DH29 117 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 INS-IGF2F8WCM5 200 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 I3L2K1 104 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 RBP4P02753 201 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 HLA-DMBP28068 263 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 RPL27AP46776 148 aaKnown RBP5.66□□□□□ -1.5
COL28A1-202ENST00000430711 MEF2CQ06413 473 aaPredicted RBP5.66□□□□□ -1.5
COL28A1-202ENST00000430711 MPV17L2Q567V2 206 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 COL5A1-AS1Q5SY13 56 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 SLC25A39Q9BZJ4 359 aaPredicted RBP5.66□□□□□ -1.5
COL28A1-202ENST00000430711 TMEM133Q9H2Q1 129 aa5.66□□□□□ -1.5
COL28A1-202ENST00000430711 A0A096LNJ9 63 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 IGHV3-35A0A0C4DH35 117 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 OR4C46A6NHA9 309 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 M0QZK8 103 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 TOMM40O96008 361 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 BPIFB3P59826 476 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 HBBP68871 147 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 NDPQ00604 133 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 GAGE1Q13065 139 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 PVRIGQ6DKI7 326 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 ZNF575Q86XF7 245 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 TMEM116Q8NCL8 245 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 OR1L4Q8NGR5 311 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 LINC01560Q8TB33 94 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 C19orf24Q9BVV8 132 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 TPPP3Q9BW30 176 aa5.65□□□□□ -1.5
COL28A1-202ENST00000430711 TRAV9-2A0A087WT02 112 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 LOC102724200A0A096LPH7 203 aaPredicted RBP5.65□□□□□ -1.51
COL28A1-202ENST00000430711 TMEM213A2RRL7 107 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 K7EIM0 57 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 P01737 135 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 TNFRSF1AP19438 455 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 C3orf36Q3SXR2 165 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 VMA21Q3ZAQ7 101 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 LRRC10Q5BKY1 277 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 DYNAPQ8N1N2 210 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 LINC00311Q8N616 119 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 SRSF12Q8WXF0 261 aaKnown RBP5.65□□□□□ -1.51
COL28A1-202ENST00000430711 TMEM186Q96B77 213 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 PERPQ96FX8 193 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 HILPDAQ9Y5L2 63 aa5.65□□□□□ -1.51
COL28A1-202ENST00000430711 A0A087X0K7 114 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 SMKR1H3BMG3 65 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 BUB1B-PAK6H3BSN5 160 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 SYS1-DBNDD2H3BUS1 97 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 TIMM23O14925 209 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 HIST1H1EP10412 219 aaKnown RBP5.64□□□□□ -1.51
COL28A1-202ENST00000430711 PTTG1IPP53801 180 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 FAM71F2Q6NXP2 309 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 PPP1R27Q86WC6 154 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 TMEM75Q8N9X5 138 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 C5orf17Q8NAS9 161 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 TRGV9Q99603 122 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 F11RQ9Y624 299 aaKnown RBP5.64□□□□□ -1.51
COL28A1-202ENST00000430711 IGHV1-69-2A0A0G2JMI3 117 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.64□□□□□ -1.51
COL28A1-202ENST00000430711 OR2T8A6NH00 312 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 NPIPB6E9PJ23 425 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 F8W735 103 aaPredicted RBP5.64□□□□□ -1.51
COL28A1-202ENST00000430711 MRPS12O15235 138 aaKnown RBP5.64□□□□□ -1.51
COL28A1-202ENST00000430711 SIGLEC15Q6ZMC9 328 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 Q6ZQT7 251 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 WFDC3Q8IUB2 231 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 C8orf46Q8TAG6 207 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 Q8TAT8 98 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 ZNF414Q96IQ9 312 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 RBM14Q96PK6 669 aaKnown RBP5.64□□□□□ -1.51
COL28A1-202ENST00000430711 DYNLRB1Q9NP97 96 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 JKAMPQ9P055 326 aa5.64□□□□□ -1.51
COL28A1-202ENST00000430711 IGKV2-40A0A087WW87 121 aaPredicted RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 IGKV2D-40P01614 121 aaPredicted RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 HOXB4P17483 251 aaPredicted RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 COL8A1P27658 744 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 C16orf54Q6UWD8 224 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 MUC15Q8N387 334 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 VSTM2AQ8TAG5 236 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 NAA38Q9BRA0 125 aaKnown RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 TMEM70Q9BUB7 260 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 RAB9BQ9NP90 201 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 HIGD1AQ9Y241 93 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 INSIG2Q9Y5U4 225 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 COX11Q9Y6N1 276 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 C2CD3Q4AC94 2353 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 LOC389332A0A1B0GUA5 103 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 LINC00614P0C842 121 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 ZNF80P51504 273 aaPredicted RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 RBX1P62877 108 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 GFRALQ6UXV0 394 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 RBPMS2Q6ZRY4 209 aaKnown RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 OR4A5Q8NH83 315 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 NEU4Q8WWR8 484 aaPredicted RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 FMC1Q96HJ9 113 aa5.63□□□□□ -1.51
COL28A1-202ENST00000430711 SPTBN1Q01082 2364 aaKnown RBP5.63□□□□□ -1.51
COL28A1-202ENST00000430711 TRBV19A0A075B6N1 114 aa5.62□□□□□ -1.51
COL28A1-202ENST00000430711 TAX1BP3O14907 124 aa5.62□□□□□ -1.51
COL28A1-202ENST00000430711 LEPROTL1O95214 131 aa5.62□□□□□ -1.51
COL28A1-202ENST00000430711 IFI27P40305 119 aaPredicted RBP5.62□□□□□ -1.51
COL28A1-202ENST00000430711 SUB1P53999 127 aaKnown RBP eCLIP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms