RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PSMB3P49720 205 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 MEOX2P50222 304 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 RAB2AP61019 212 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 SERF2P84101 59 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 HAGHQ16775 308 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 FAM78BQ5VT40 261 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 TMUB2Q71RG4 321 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 BPIFA4PQ86YQ2 179 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 SBSPONQ8IVN8 264 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 ARPC5LQ9BPX5 153 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 MRPL32Q9BYC8 188 aaKnown RBP9.16□□□□□ -0.94
USP40-205ENST00000430158 HRH4Q9H3N8 390 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 ZNF586Q9NXT0 402 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 RNF24Q9Y225 148 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 SLC17A3O00476 420 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 BCL2L11O43521 198 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 NDUFB4O95168 129 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 SPP1P10451 314 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 M6PRP20645 277 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 DEFB1P60022 68 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 PSMG4Q5JS54 123 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 IGFL4Q6B9Z1 124 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 RPP25LQ8N5L8 163 aaKnown RBP9.15□□□□□ -0.94
USP40-205ENST00000430158 GNPNAT1Q96EK6 184 aaPredicted RBP9.15□□□□□ -0.94
USP40-205ENST00000430158 HYLS1Q96M11 299 aa9.15□□□□□ -0.94
USP40-205ENST00000430158 KNCNA6PVL3 124 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 EIF3GO75821 320 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP40-205ENST00000430158 SNRPCP09234 159 aaKnown RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 GIG44P09565 113 aaPredicted RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 PYYP10082 97 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 HIST1H1EP10412 219 aaKnown RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 ATF4P18848 351 aaPredicted RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 HLA-DMBP28068 263 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 SNRPD3P62318 126 aaKnown RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 ACOT6Q3I5F7 207 aaPredicted RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 SAMD13Q5VXD3 122 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 C9orf62Q8N4C0 152 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 FXYD5Q96DB9 178 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 KRTAP4-12Q9BQ66 201 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 TUBA4BQ9H853 241 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 ZNF331Q9NQX6 463 aaPredicted RBP9.14□□□□□ -0.95
USP40-205ENST00000430158 RPRMQ9NS64 109 aa9.14□□□□□ -0.95
USP40-205ENST00000430158 TRBV19A0A075B6N1 114 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 A8MTW9 85 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 H3BTX0 84 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 ID1P41134 155 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 RHOBP62745 196 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 GDF5OSQ5U4N7 250 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 SSX7Q7RTT5 188 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 TRPT1Q86TN4 253 aaKnown RBP9.13□□□□□ -0.95
USP40-205ENST00000430158 RNF182Q8N6D2 247 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 OR10G4Q8NGN3 311 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 OR10G9Q8NGN4 311 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 OR10G7Q8NGN6 311 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 STOML3Q8TAV4 291 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 C16orf92Q96LL3 132 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 ASCL2Q99929 193 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 TM2D3Q9BRN9 247 aa9.13□□□□□ -0.95
USP40-205ENST00000430158 LOC102724200A0A096LPH7 203 aaPredicted RBP9.12□□□□□ -0.95
USP40-205ENST00000430158 KIR2DL5BA0A0G2JN68 375 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 KIR2DL5BA0A0G2JPC4 375 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 H3BMM0 161 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 ZNF253O75346 499 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 ZNF726P1Q15940 193 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 GUK1Q16774 197 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 LCN15Q6UWW0 184 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 KIR2DL5AQ8N109 375 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 KIR2DL5BQ8NHK3 375 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 SUN5Q8TC36 379 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 LINC00052Q96N35 136 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 CLUHP3Q96NS8 147 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 OR51M1Q9H341 326 aa9.12□□□□□ -0.95
USP40-205ENST00000430158 SAV1Q9H4B6 383 aaPredicted RBP9.12□□□□□ -0.95
USP40-205ENST00000430158 A0A0J9YX75 114 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 KANTRA0A1W2PQU2 76 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 F6UB75 175 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 MBP02144 154 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 NBEAP1P0C6P0 100 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 STAG3L2P0CL84 134 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 STAG3L3P0CL85 134 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 HLA-DRB4P13762 266 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 RPL35AP18077 110 aaKnown RBP9.11□□□□□ -0.95
USP40-205ENST00000430158 PDE6HQ13956 83 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 PSG3Q16557 428 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 TMEM41BQ5BJD5 291 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 ACTL10Q5JWF8 245 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 FAM122CQ6P4D5 195 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 FOXI2Q6ZQN5 318 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 RNF141Q8WVD5 230 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 RAB24Q969Q5 203 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 SLC50A1Q9BRV3 221 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 PAXXQ9BUH6 204 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 HLA-DRB4X5D2U9 266 aa9.11□□□□□ -0.95
USP40-205ENST00000430158 DNAH7Q8WXX0 4024 aa9.1□□□□□ -0.95
USP40-205ENST00000430158 OR10J4P0C629 311 aa9.1□□□□□ -0.95
USP40-205ENST00000430158 SEC11BP0C7V7 166 aa9.1□□□□□ -0.95
USP40-205ENST00000430158 NHLRC4P0CG21 123 aaPredicted RBP9.1□□□□□ -0.95
USP40-205ENST00000430158 CDC34P49427 236 aaPredicted RBP9.1□□□□□ -0.95
USP40-205ENST00000430158 ZFP69Q49AA0 526 aa9.1□□□□□ -0.95
USP40-205ENST00000430158 BAP18Q8IXM2 172 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms