RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 WNT9BO14905 357 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 FXYD2P54710 66 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 ZNF497Q6ZNH5 498 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 NUP35Q8NFH5 326 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 CHD7Q9P2D1 2997 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 IGHV3-43A0A0B4J1X8 118 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 PRSS1P07477 247 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 IGHV3-43DP0DP04 118 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 ORM2P19652 201 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 SFTA2Q6UW10 78 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 TEN1Q86WV5 123 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 OR1L4Q8NGR5 311 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 PRNDQ9UKY0 176 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 LSM4Q9Y4Z0 139 aaKnown RBP7.91□□□□□ -1.14
USP54-205ENST00000424265 ZNF503-AS2A6NEH8 195 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 K7EN84 100 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 FCGR3BO75015 233 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 Q6ZS49 121 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 NCBP2LA6PVI3 153 aaKnown RBP7.91□□□□□ -1.14
USP54-205ENST00000424265 CRXO43186 299 aaPredicted RBP7.91□□□□□ -1.14
USP54-205ENST00000424265 LINC01545Q5VT33 79 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 C15orf53Q8NAA6 179 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 SIGLEC9Q9Y336 463 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 DEFB108AA8MXU0 73 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 SHISA9B4DS77 424 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 DEFA4P12838 97 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 RRN3P1Q2M238 152 aa7.91□□□□□ -1.14
USP54-205ENST00000424265 ARL16Q0P5N6 197 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 DIAPH2-AS1Q14236 149 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 ATP5L2Q7Z4Y8 100 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 FLYWCH2Q96CP2 140 aaKnown RBP7.9□□□□□ -1.14
USP54-205ENST00000424265 E9PLD3 99 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 C11orf1Q9H5F2 150 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 PKIGQ9Y2B9 76 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 HIGD1CA8MV81 97 aa7.9□□□□□ -1.14
USP54-205ENST00000424265 IGKV1-27A0A075B6S5 117 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 LOC389332A0A1B0GUA5 103 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 SMIM27A0A1W2PRY6 76 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 M0R1W7 72 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 SRSF9Q13242 221 aaKnown RBP eCLIP7.9□□□□□ -1.15
USP54-205ENST00000424265 C12orf74Q32Q52 190 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 LCNL1Q6ZST4 164 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 MYO7BQ6PIF6 2116 aa7.9□□□□□ -1.15
USP54-205ENST00000424265 IGKV1-12A0A0C4DH73 117 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 PGLYRP1O75594 196 aaPredicted RBP7.89□□□□□ -1.15
USP54-205ENST00000424265 IGKV1D-12P01611 117 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 Q1RN00 199 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 ABHD12Q8N2K0 398 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 ZNF843Q8N446 348 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 FAM216BQ8N7L0 139 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 ZNRF1Q8ND25 227 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 PGLYRP4Q96LB8 373 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 PTPRBP23467 1997 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 SCTP09683 121 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 HERVK_113P63121 156 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 TEX36Q5VZQ5 186 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 CHCHD5Q9BSY4 110 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 OOSP1A8MZH6 123 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 C12orf77C9JDV5 145 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 TRACP01848 142 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 PCSK4Q6UW60 755 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 CIARTQ8N365 385 aaPredicted RBP7.89□□□□□ -1.15
USP54-205ENST00000424265 CYYR1Q96J86 154 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 FAM90A26D6RGX4 464 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 NPIPB6E9PJ23 425 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 PMVKQ15126 192 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 SIGLEC15Q6ZMC9 328 aa7.89□□□□□ -1.15
USP54-205ENST00000424265 COL8A1P27658 744 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 C5orf63A6NC05 138 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 MPDU1O75352 247 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 NDUFA7O95182 113 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 P01737 135 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 TMEM219Q86XT9 240 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 UBALD1Q8TB05 177 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 SSMEM1Q8WWF3 244 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 TMEM101Q96IK0 257 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 COL6A6A6NMZ7 2263 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 B4DSR2 109 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 GTF3C1Q12789 2109 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 SPINK9Q5DT21 86 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 WIPF2Q8TF74 440 aaPredicted RBP7.88□□□□□ -1.15
USP54-205ENST00000424265 SPANXDQ9BXN6 97 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 LIME1Q9H400 295 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 DPM3Q9P2X0 92 aa7.88□□□□□ -1.15
USP54-205ENST00000424265 DTX2Q86UW9 622 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 PCP2Q8IVA1 136 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 LINC00479Q96M42 142 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 TMEM160Q9NX00 188 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 ZGRF1Q86YA3 2104 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 RBP4P02753 201 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 SRD5A1P18405 259 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 ZNF138P52744 262 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 DLX6P56179 175 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 ZNF56Q15929 161 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 MIC13Q5XKP0 118 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 Q6P435 159 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 KAAG1Q9UBP8 84 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 TWIST1Q15672 202 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 SCGB1D4Q6XE38 83 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 Q6ZR03 302 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms