RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RANP62826 216 aaKnown RBP13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 FHL3Q13643 280 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 PDE6HQ13956 83 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 OR9G4Q8NGQ1 327 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 SLC35B3Q9H1N7 401 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 ZNF586Q9NXT0 402 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 NBEAL1Q6ZS30 2694 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 TRBV19A0A075B6N1 114 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 C2orf70A6NJV1 201 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 H3BQ15 152 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 CHEK1O14757 476 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 MRPS12O15235 138 aaKnown RBP13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 SFTA3P0C7M3 94 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 MYCNOSP40205 109 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 KRTAP10-3P60369 221 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 PSG9Q00887 426 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 KRTAP24-1Q3LI83 254 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 GLMPQ8WWB7 406 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 KRBOX1C9JBD0 128 aa13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 SUMO1P63165 101 aaKnown RBP13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 CMTM2Q8TAZ6 248 aa13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 DYNLRB2Q8TF09 96 aa13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 DLX4Q92988 240 aaPredicted RBP13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 Q9H3A6 140 aa13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 OTORQ9NRC9 128 aa13.04□□□□□ -0.32
CCDC28B-202ENST00000421922 A0A087X0K7 114 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 F8W036 122 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 OVOL1O14753 267 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 NDUFS6O75380 124 aaKnown RBP13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 SLC25A5P05141 298 aaKnown RBP13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 SRP19P09132 144 aaKnown RBP13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 S100A1P23297 94 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 CD81P60033 236 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 TCF24Q7RTU0 167 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 LYPD1Q8N2G4 141 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 SLC50A1Q9BRV3 221 aa13.03□□□□□ -0.32
CCDC28B-202ENST00000421922 TMEM218A2RU14 115 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 PGPA6NDG6 321 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 ADARB2-AS1A8MUL3 147 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 GGTLC3B5MD39 225 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 TMEM250H0YL14 139 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 ZNF253O75346 499 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 FOLR2P14207 255 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 CBLN1P23435 193 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 SOHLH1Q5JUK2 328 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 CYB561D1Q8N8Q1 229 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 TMEM158Q8WZ71 300 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 TCEAL7Q9BRU2 100 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 RPH3ALQ9UNE2 315 aa13.02□□□□□ -0.33
CCDC28B-202ENST00000421922 CSN1S1P47710 185 aa13.01□□□□□ -0.33
CCDC28B-202ENST00000421922 C17orf77Q96MU5 243 aa13.01□□□□□ -0.33
CCDC28B-202ENST00000421922 SMAD5-AS1Q9Y6J3 95 aa13.01□□□□□ -0.33
CCDC28B-202ENST00000421922 WNK1Q9H4A3 2382 aa13.01□□□□□ -0.33
CCDC28B-202ENST00000421922 IGKV3-7A0A075B6H7 116 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 SCO2A0A1W2PP80 73 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 C9JQL5 133 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 SLC17A3O00476 420 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 EDN2P20800 178 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 SAMD13Q5VXD3 122 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 C5orf17Q8NAS9 161 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 RPUSD4Q96CM3 377 aaKnown RBP13□□□□□ -0.33
CCDC28B-202ENST00000421922 C16orf92Q96LL3 132 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 CITED1Q99966 193 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 NRN1Q9NPD7 142 aa13□□□□□ -0.33
CCDC28B-202ENST00000421922 NDUFB4O95168 129 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 AKR1C3P42330 323 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 ZNF674Q2M3X9 581 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 C12orf54Q6X4T0 127 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 EXOC3-AS1Q8N2X6 119 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 C3orf56Q8N813 242 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 CLEC5AQ9NY25 188 aa12.99□□□□□ -0.33
CCDC28B-202ENST00000421922 DNASE2O00115 360 aaPredicted RBP12.98□□□□□ -0.33
CCDC28B-202ENST00000421922 PEX7O00628 323 aa12.98□□□□□ -0.33
CCDC28B-202ENST00000421922 PAFAH1B2P68402 229 aa12.98□□□□□ -0.33
CCDC28B-202ENST00000421922 HIST1H2BAQ96A08 127 aa12.98□□□□□ -0.33
CCDC28B-202ENST00000421922 LINC00052Q96N35 136 aa12.98□□□□□ -0.33
CCDC28B-202ENST00000421922 SEC11CQ9BY50 192 aa12.98□□□□□ -0.33
CCDC28B-202ENST00000421922 K7EQM0 130 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 CSN3P07498 182 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 ID1P41134 155 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 CNN1P51911 297 aaKnown RBP12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 RBPMS2Q6ZRY4 209 aaKnown RBP12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 CCDC28AQ8IWP9 274 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 C11orf52Q96A22 123 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 SMIM7Q9BQ49 75 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 ZNF331Q9NQX6 463 aaPredicted RBP12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 EPDR1Q9UM22 224 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 PRELID1Q9Y255 219 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 SELENOKQ9Y6D0 94 aa12.97□□□□□ -0.33
CCDC28B-202ENST00000421922 ZNF727A8MUV8 499 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 UBE2G1P62253 170 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 GNG5P63218 68 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 FAM74A3Q4VXF1 159 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 NIPSNAP3BQ9BS92 247 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 ATG101Q9BSB4 218 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 PARLQ9H300 379 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 MLXQ9UH92 298 aa12.96□□□□□ -0.33
CCDC28B-202ENST00000421922 SAP30O75446 220 aa12.96□□□□□ -0.34
CCDC28B-202ENST00000421922 APOC3P02656 99 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms