RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 SLC25A17O43808 307 aa11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 FOXC1Q12948 553 aa11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 RIGQ13278 110 aa11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 PPP1R35Q8TAP8 253 aa11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 FMC1Q96HJ9 113 aa11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 GEMIN7Q9H840 131 aaKnown RBP11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 SPANXB1Q9NS25 103 aaPredicted RBP11.77□□□□□ -0.52
NCKIPSD-204ENST00000416649 OR1L8Q8NGR8 309 aa11.77□□□□□ -0.53
NCKIPSD-204ENST00000416649 SIGLEC8Q9NYZ4 499 aa11.77□□□□□ -0.53
NCKIPSD-204ENST00000416649 SPTAN1Q13813 2472 aaKnown RBP11.77□□□□□ -0.53
NCKIPSD-204ENST00000416649 ABCA4P78363 2273 aa11.77□□□□□ -0.53
NCKIPSD-204ENST00000416649 TCRBV4S1A1TA0A5B7 111 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 MYCNOSP40205 109 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 LGALS9BQ3B8N2 356 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 LGALS9CQ6DKI2 356 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 GFRA4Q9GZZ7 299 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 KLF12Q9Y4X4 402 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 PRB3Q04118 309 aaPredicted RBP11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 SPRNQ5BIV9 151 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 EXOC3-AS1Q8N2X6 119 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 IFI27L1Q96BM0 104 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 SSUH2Q9Y2M2 353 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 TMEM189A5PLL7 270 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 FCER1GP30273 86 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 MC5RP33032 325 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 DUX4L9Q6RFH8 374 aaPredicted RBP11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 CACNG8Q8WXS5 425 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 HARBI1Q96MB7 349 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 ZNF492Q9P255 531 aa11.76□□□□□ -0.53
NCKIPSD-204ENST00000416649 SPTBN1Q01082 2364 aaKnown RBP11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 PPIFP30405 207 aaKnown RBP11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 IGKV2D-26A0A0A0MRZ7 120 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 SIVA1O15304 175 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 CT45A6P0DMU7 189 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 CT45A5P0DMU8 189 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 CT45A7P0DMV0 189 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 DPF1Q92782 380 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 PRELID3AQ96N28 172 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 CHAC1Q9BUX1 264 aa11.75□□□□□ -0.53
NCKIPSD-204ENST00000416649 NPIPB6E9PJ23 425 aa11.74□□□□□ -0.53
NCKIPSD-204ENST00000416649 SMKR1H3BMG3 65 aa11.74□□□□□ -0.53
NCKIPSD-204ENST00000416649 Q86TA4 180 aa11.74□□□□□ -0.53
NCKIPSD-204ENST00000416649 AMN1Q8IY45 258 aa11.74□□□□□ -0.53
NCKIPSD-204ENST00000416649 HCP5Q6MZN7 132 aa11.74□□□□□ -0.53
NCKIPSD-204ENST00000416649 PLSCR4Q9NRQ2 329 aa11.74□□□□□ -0.53
NCKIPSD-204ENST00000416649 IGKV1D-37A0A075B6S9 117 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 C17orf58Q2M2W7 97 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 LCNL1Q6ZST4 164 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 SLC25A48Q6ZT89 311 aaKnown RBP11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 ZNF479Q96JC4 524 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 ZNF71Q9NQZ8 489 aaPredicted RBP11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 AGRNO00468 2067 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 A0A1W2PRD5 423 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 A0A1W2PRF3 423 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 A0A1W2PRM7 423 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 TMEM213A2RRL7 107 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 HBDP02042 147 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 IGHV1-2P23083 117 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 WT1-ASQ06250 92 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 RUSC1-AS1Q66K80 236 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 FAM222BQ8WU58 562 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 MRAP2Q96G30 205 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 ZNF48Q96MX3 618 aaPredicted RBP11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 FSTL3O95633 263 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 C9orf106Q8NAJ2 232 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 C20orf78Q9BR46 151 aa11.73□□□□□ -0.53
NCKIPSD-204ENST00000416649 TRAV17A0A0B4J275 112 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 MOGAT3Q86VF5 341 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 SPATA25Q9BR10 227 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 PIEZO1Q92508 2521 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 A0A1B0GWB2 263 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 F8W1H4 67 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 GTSCR1Q86UQ5 136 aa11.72□□□□□ -0.53
NCKIPSD-204ENST00000416649 PRSS1P07477 247 aa11.71□□□□□ -0.53
NCKIPSD-204ENST00000416649 GCSAMQ8N6F7 178 aa11.71□□□□□ -0.53
NCKIPSD-204ENST00000416649 DSCAMO60469 2012 aa11.71□□□□□ -0.54
NCKIPSD-204ENST00000416649 NDUFS7O75251 213 aa11.71□□□□□ -0.54
NCKIPSD-204ENST00000416649 POU2AF1Q16633 256 aa11.71□□□□□ -0.54
NCKIPSD-204ENST00000416649 NDUFA4L2Q9NRX3 87 aa11.71□□□□□ -0.54
NCKIPSD-204ENST00000416649 CR1LQ2VPA4 569 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 GAGE13Q4V321 117 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 FOXI2Q6ZQN5 318 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 NBL1P41271 181 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 KIR2DL2P43627 348 aaPredicted RBP11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 LYZP61626 148 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 FAM169BQ8N8A8 192 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 MRPL20Q9BYC9 149 aaKnown RBP11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 TRBV25-1A0A075B6N4 114 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 SRRM5B3KS81 715 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 IGLL5B9A064 214 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 ORMDL3Q8N138 153 aa11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.7□□□□□ -0.54
NCKIPSD-204ENST00000416649 CUBNO60494 3623 aa11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 SUB1P53999 127 aaKnown RBP eCLIP11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 ATP5IP56385 69 aaPredicted RBP11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 SPRY3O43610 288 aa11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 CKS2P33552 79 aa11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 TCTEX1D4Q5JR98 221 aa11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 SFTA2Q6UW10 78 aa11.69□□□□□ -0.54
NCKIPSD-204ENST00000416649 SCNM1Q9BWG6 230 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms