RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 OR2K2Q8NGT1 345 aa10.74□□□□□ -0.69
SF3B1-204ENST00000414963 DYNLRB2Q8TF09 96 aa10.74□□□□□ -0.69
SF3B1-204ENST00000414963 MCRIP2Q9BUT9 160 aaKnown RBP10.74□□□□□ -0.69
SF3B1-204ENST00000414963 NRN1Q9NPD7 142 aa10.74□□□□□ -0.69
SF3B1-204ENST00000414963 GNG13Q9P2W3 67 aa10.74□□□□□ -0.69
SF3B1-204ENST00000414963 TRAV2A0A0B4J234 112 aa10.73□□□□□ -0.69
SF3B1-204ENST00000414963 FAM74A7A6NL05 159 aa10.73□□□□□ -0.69
SF3B1-204ENST00000414963 TSPAN4O14817 238 aa10.73□□□□□ -0.69
SF3B1-204ENST00000414963 IFNA1P01562 189 aa10.73□□□□□ -0.69
SF3B1-204ENST00000414963 IGLV1-51P01701 117 aa10.73□□□□□ -0.69
SF3B1-204ENST00000414963 FAM210AQ96ND0 272 aa10.73□□□□□ -0.69
SF3B1-204ENST00000414963 NKX6-2Q9C056 277 aaPredicted RBP10.73□□□□□ -0.69
SF3B1-204ENST00000414963 YTHDF2Q9Y5A9 579 aaKnown RBP10.73□□□□□ -0.69
SF3B1-204ENST00000414963 RAB19A4D1S5 217 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 RBFOX3A6NFN3 312 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 SOCS3O14543 225 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 PAGE4O60829 102 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 NDUFS6O75380 124 aaKnown RBP10.72□□□□□ -0.69
SF3B1-204ENST00000414963 SAP30O75446 220 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 BCL2P10415 239 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 RPL11P62913 178 aaKnown RBP10.72□□□□□ -0.69
SF3B1-204ENST00000414963 PSG9Q00887 426 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 CD300EQ496F6 205 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-204ENST00000414963 ZNF506Q5JVG8 444 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 C9orf66Q5T8R8 295 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 ARL6IP6Q8N6S5 226 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 SPATA3Q8NHX4 192 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 DCANP1Q8TF63 244 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 BLNKQ8WV28 456 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 TXNDC17Q9BRA2 123 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 SLC50A1Q9BRV3 221 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 MS4A6AQ9H2W1 248 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 ZNF331Q9NQX6 463 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-204ENST00000414963 CLEC5AQ9NY25 188 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 VAX2Q9UIW0 290 aa10.72□□□□□ -0.69
SF3B1-204ENST00000414963 LOC102723971A0A1B0GUV8 181 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 H3BTX0 84 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 SLC17A3O00476 420 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 WIPF1O43516 503 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 SNRPCP09234 159 aaKnown RBP10.71□□□□□ -0.69
SF3B1-204ENST00000414963 CD33P20138 364 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 RANP62826 216 aaKnown RBP10.71□□□□□ -0.69
SF3B1-204ENST00000414963 PAFAH1B2P68402 229 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 RBPMS2Q6ZRY4 209 aaKnown RBP10.71□□□□□ -0.69
SF3B1-204ENST00000414963 CCDC28AQ8IWP9 274 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 TMEM61Q8N0U2 210 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 SMDT1Q9H4I9 107 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 OTORQ9NRC9 128 aa10.71□□□□□ -0.69
SF3B1-204ENST00000414963 TRAV8-2A0A0B4J237 113 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 GGTLC3B5MD39 225 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 K7EQG2 157 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 ISLRO14498 428 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 UBE2G2P60604 165 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 HAGHQ16775 308 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 EIF4E3Q8N5X7 224 aaKnown RBP10.7□□□□□ -0.7
SF3B1-204ENST00000414963 SPAG8Q99932 426 aaPredicted RBP10.7□□□□□ -0.7
SF3B1-204ENST00000414963 RARRES2Q99969 163 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 TCEAL7Q9BRU2 100 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 Q9H3A6 140 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 PRELID1Q9Y255 219 aa10.7□□□□□ -0.7
SF3B1-204ENST00000414963 PGPA6NDG6 321 aa10.69□□□□□ -0.7
SF3B1-204ENST00000414963 SUMO1P63165 101 aaKnown RBP10.69□□□□□ -0.7
SF3B1-204ENST00000414963 MEF2BQ02080 365 aaPredicted RBP10.69□□□□□ -0.7
SF3B1-204ENST00000414963 ICAM4Q14773 271 aa10.69□□□□□ -0.7
SF3B1-204ENST00000414963 CST9LP1Q5W188 147 aa10.69□□□□□ -0.7
SF3B1-204ENST00000414963 AAMDCQ9H7C9 122 aa10.69□□□□□ -0.7
SF3B1-204ENST00000414963 SELENOKQ9Y6D0 94 aa10.69□□□□□ -0.7
SF3B1-204ENST00000414963 ANK2Q01484 3957 aa10.69□□□□□ -0.7
SF3B1-204ENST00000414963 IZUMO1RA6ND01 250 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 C11orf94C9JXX5 98 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 DNASE2O00115 360 aaPredicted RBP10.68□□□□□ -0.7
SF3B1-204ENST00000414963 ID1P41134 155 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 CD81P60033 236 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 PEA15Q15121 130 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 NDUFA5Q16718 116 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 TOR2AQ5JU69 321 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 PRR31Q5SQ13 230 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 LCN12Q6JVE5 192 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 UQCC3Q6UW78 93 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 EXOC3-AS1Q8N2X6 119 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 GBGT1Q8N5D6 347 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 C5orf17Q8NAS9 161 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 MRPL53Q96EL3 112 aaKnown RBP10.68□□□□□ -0.7
SF3B1-204ENST00000414963 C16orf92Q96LL3 132 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 GPR61Q9BZJ8 451 aa10.68□□□□□ -0.7
SF3B1-204ENST00000414963 EIF5A2Q9GZV4 153 aaKnown RBP10.68□□□□□ -0.7
SF3B1-204ENST00000414963 ZNF256Q9Y2P7 627 aaPredicted RBP10.68□□□□□ -0.7
SF3B1-204ENST00000414963 IGKV3-7A0A075B6H7 116 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 OR4C46A6NHA9 309 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 PDE6DO43924 150 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 ATP5G3P48201 142 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 SRSF3P84103 164 aaKnown RBP10.67□□□□□ -0.7
SF3B1-204ENST00000414963 PSG3Q16557 428 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 COMMD7Q86VX2 200 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 RXFP4Q8TDU9 374 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 EPDR1Q9UM22 224 aa10.67□□□□□ -0.7
SF3B1-204ENST00000414963 F6UZH7 168 aa10.66□□□□□ -0.7
SF3B1-204ENST00000414963 BEAN1Q3B7T3 259 aa10.66□□□□□ -0.7
SF3B1-204ENST00000414963 WFDC3Q8IUB2 231 aa10.66□□□□□ -0.7
SF3B1-204ENST00000414963 HIST1H2BAQ96A08 127 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms