RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 C8orf31Q8N9H6 132 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 RITA1Q96K30 269 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 M0R381 172 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 PET117Q6UWS5 81 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 DPF1Q92782 380 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 C20orf144Q9BQM9 153 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 SLC50A1Q9BRV3 221 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 EFNA4P52798 201 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 SCGB1D4Q6XE38 83 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 MSRB2Q9Y3D2 182 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 SH2D7A6NKC9 451 aaPredicted RBP14.8□□□□□ -0.04
USP48-204ENST00000400301 TMEM219Q86XT9 240 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 HCFC1P51610 2035 aa14.8□□□□□ -0.04
USP48-204ENST00000400301 ARMS2P0C7Q2 107 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 PATE2Q6UY27 113 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 RCHY1Q96PM5 261 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 ZNF492Q9P255 531 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 FAM106AQ4KMX7 169 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 RAB37Q96AX2 223 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 C7orf69Q9H7B7 122 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 C22orf46C9J442 243 aa14.79□□□□□ -0.04
USP48-204ENST00000400301 TRBV19A0A075B6N1 114 aa14.78□□□□□ -0.04
USP48-204ENST00000400301 GCSHP23434 173 aa14.78□□□□□ -0.04
USP48-204ENST00000400301 D6R8Y8 96 aa14.78□□□□□ -0.04
USP48-204ENST00000400301 NBL1P41271 181 aa14.78□□□□□ -0.04
USP48-204ENST00000400301 ERASQ7Z444 233 aa14.78□□□□□ -0.04
USP48-204ENST00000400301 FAM167A-AS1Q96KT0 104 aa14.78□□□□□ -0.04
USP48-204ENST00000400301 TNRC6AQ8NDV7 1962 aaKnown RBP14.78□□□□□ -0.04
USP48-204ENST00000400301 LOC102724200A0A096LPH7 203 aaPredicted RBP14.78□□□□□ -0.04
USP48-204ENST00000400301 ATRXP46100 2492 aa14.77□□□□□ -0.04
USP48-204ENST00000400301 SH2D1AO60880 128 aa14.77□□□□□ -0.04
USP48-204ENST00000400301 NDUFB8O95169 186 aa14.77□□□□□ -0.04
USP48-204ENST00000400301 ALKBH7Q9BT30 221 aaPredicted RBP14.77□□□□□ -0.04
USP48-204ENST00000400301 MCRIP2Q9BUT9 160 aaKnown RBP14.77□□□□□ -0.04
USP48-204ENST00000400301 GAGE10A6NGK3 116 aa14.77□□□□□ -0.05
USP48-204ENST00000400301 NCR2O95944 276 aa14.77□□□□□ -0.05
USP48-204ENST00000400301 CT83Q5H943 113 aa14.77□□□□□ -0.05
USP48-204ENST00000400301 A1L4Q6 167 aa14.77□□□□□ -0.05
USP48-204ENST00000400301 HBDP02042 147 aa14.77□□□□□ -0.05
USP48-204ENST00000400301 DMRTC2Q8IXT2 367 aaPredicted RBP14.76□□□□□ -0.05
USP48-204ENST00000400301 TMEM190Q8WZ59 177 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 GFRA4Q9GZZ7 299 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 MRPL36Q9P0J6 103 aaKnown RBP14.76□□□□□ -0.05
USP48-204ENST00000400301 TRAV40A0A0B4J280 105 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 hDV102S1A0JD36 115 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 FRMD6-AS1P0C7T7 363 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 IGFBPL1Q8WX77 278 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 SYS1-DBNDD2H3BUS1 97 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 TDGF1P3P51864 188 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 ST20Q9HBF5 79 aa14.76□□□□□ -0.05
USP48-204ENST00000400301 PRSS46E5RG02 174 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 CACNG7P62955 275 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 RPL24P83731 157 aaKnown RBP14.75□□□□□ -0.05
USP48-204ENST00000400301 BPESC1Q9GZL8 116 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 UNQ6494/PRO21346Q6UXR6 183 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 TMEM160Q9NX00 188 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 J3QR89 54 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 SAA4P35542 130 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 IGKV3-20P01619 116 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 PDE6HQ13956 83 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 EBLN2Q6P2I7 272 aa14.75□□□□□ -0.05
USP48-204ENST00000400301 FAM231BA6NCW3 169 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 EVI2AP22794 236 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 FXYD7P58549 80 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 AMN1Q8IY45 258 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 ZNF502Q8TBZ5 544 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 TMEM208Q9BTX3 173 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 CDH23Q9H251 3354 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 PAX8Q06710 450 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 SRSF9Q13242 221 aaKnown RBP eCLIP14.74□□□□□ -0.05
USP48-204ENST00000400301 FOXC2Q99958 501 aa14.74□□□□□ -0.05
USP48-204ENST00000400301 LEPP41159 167 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 TMEM14CQ9P0S9 112 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 NAV3Q8IVL0 2385 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 TRAV41A0A0B4J266 112 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 BRD3OSQ6XYD6 125 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 DOPEY2Q9Y3R5 2298 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 HERVK_113P61574 105 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 C17orf77Q96MU5 243 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 NCOR2Q9Y618 2525 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 KIAA1549Q9HCM3 1950 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 A0A0G2JLM5 398 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 IGLV2-23P01705 113 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 PPBPP02775 128 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 ZNF124Q15973 351 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 GLMPQ8WWB7 406 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 IFI27L1Q96BM0 104 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 ZNF503Q96F45 646 aa14.73□□□□□ -0.05
USP48-204ENST00000400301 TSPOP30536 169 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 FBLN7Q53RD9 439 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 TMEM75Q8N9X5 138 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 ASIPP42127 132 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 C21orf62-AS1Q17RA5 79 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 FAM159AQ6UWV7 190 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 ZNF491Q8N8L2 437 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 LINC00574Q9H8X3 128 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 TRAV8-6A0A0B4J262 113 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 H3BRN7 92 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 NPFFO15130 113 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 NDPQ00604 133 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms