RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SVBPQ8N300 66 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 OR10G2Q8NGC3 310 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 S100ZQ8WXG8 99 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 DPY30Q9C005 99 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 TUBA4BQ9H853 241 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 BET1LQ9NYM9 111 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 C21orf62Q9NYP8 219 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 TP73-AS1Q9UF72 201 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 CELA1Q9UNI1 258 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF443Q9Y2A4 671 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF831Q5JPB2 1677 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 AKAP11Q9UKA4 1901 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 NRXN2Q9P2S2 1712 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 IGHV3-21A0A0B4J1V1 117 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ODAMA1E959 279 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 FAM168BA1KXE4 195 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 A6NDX4 124 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 H3BMG7 143 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF73O43830 326 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 KLF7O75840 302 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 HLA-DQA1P01909 254 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF80P51504 273 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 FOXA1P55317 472 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 IQCJQ1A5X6 159 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 HIGD2BQ4VC39 106 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 FAM104BQ5XKR9 115 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 MRPL54Q6P161 138 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 C22orf39Q6P5X5 142 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 LCA10Q71F78 164 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 RPP25LQ8N5L8 163 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 Q8N9W7 124 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 OR5C1Q8NGR4 320 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 H1FXQ92522 213 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 VAMP8Q9BV40 100 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 RNF11Q9Y3C5 154 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 COL5A3P25940 1745 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-204ENST00000399489 MYH7P12883 1935 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 CDH23Q9H251 3354 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 TRAV13-1A0A0B4J241 112 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 TCRBV3S1A0A5B6 114 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 TMEM223A0PJW6 202 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 OR2T8A6NH00 312 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 C11orf94C9JXX5 98 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 APOC3P02656 99 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 CRYBB3P26998 211 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 TAS2R45P59539 299 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 DIAPH2-AS1Q14236 149 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 PEA15Q15121 130 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 AMTNQ6UX39 209 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF101Q8IZC7 436 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 ELSPBP1Q96BH3 223 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 DPH3Q96FX2 82 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 S100A13Q99584 98 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 ATG5Q9H1Y0 275 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 FAM60AQ9NP50 221 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 KLK5Q9Y337 293 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-204ENST00000399489 AP4S1Q9Y587 144 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 PHLDA3Q9Y5J5 127 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 DOCK5Q9H7D0 1870 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 EYSQ5T1H1 3165 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 PCNX3Q9H6A9 2034 aa2.75□□□□□ -1.97
HMGB1-204ENST00000399489 RGPD2P0DJD1 1756 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 DLEC1Q9Y238 1755 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 A0A1B0GW54 56 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF727A8MUV8 499 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 G3V3Q6 166 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 M0R378 163 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 RER1O15258 196 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 NDUFB3O43676 98 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF324O75467 553 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-204ENST00000399489 MT-ND6P03923 174 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 LINC00032P0C843 101 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 PYYP10082 97 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 GZMBP10144 247 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 ELK1P19419 428 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST1H2BOP23527 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST1H2BBP33778 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST1H2BDP58876 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST1H2BCP62807 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 QRFPP83859 136 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 KLRD1Q13241 179 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST2H2BEQ16778 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 LGALS9BQ3B8N2 356 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 Q5BKY6 102 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-204ENST00000399489 LGALS9CQ6DKI2 356 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 AAED1Q7RTV5 226 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 ADM2Q7Z4H4 148 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 AMN1Q8IY45 258 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 C10orf126Q8N4M7 172 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 LINC00471Q8N535 108 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 KCNRGQ8N5I3 272 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 DAND5Q8N907 189 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 OR8D4Q8NGM9 314 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 DCANP1Q8TF63 244 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 COPS9Q8WXC6 57 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 PSMF1Q92530 271 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST1H2BHQ93079 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 HIST1H2BNQ99877 126 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms