RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ZNF474Q6S9Z5 364 aaPredicted RBP8.75□□□□□ -1.01
CCDC40-204ENST00000397545 Q6ZR03 302 aa8.75□□□□□ -1.01
CCDC40-204ENST00000397545 RPRMLQ8N4K4 120 aa8.75□□□□□ -1.01
CCDC40-204ENST00000397545 ST20Q9HBF5 79 aa8.75□□□□□ -1.01
CCDC40-204ENST00000397545 FLNBO75369 2602 aaKnown RBP8.75□□□□□ -1.01
CCDC40-204ENST00000397545 MEIG1Q5JSS6 88 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 Q5PR19 223 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 GTSCR1Q86UQ5 136 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 TMEM167AQ8TBQ9 72 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 SORL1Q92673 2214 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 JMJD1CQ15652 2540 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 A0A1B0GW15 77 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 CRIP3Q6Q6R5 217 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 RNASE1P07998 156 aaKnown RBP8.74□□□□□ -1.01
CCDC40-204ENST00000397545 GAFA1Q96PS6 74 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 SUMO2P61956 95 aaKnown RBP8.74□□□□□ -1.01
CCDC40-204ENST00000397545 LURAP1LQ8IV03 231 aa8.74□□□□□ -1.01
CCDC40-204ENST00000397545 IGKV3D-20A0A0C4DH25 116 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 TMEM178BH3BS89 294 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 SYS1-DBNDD2H3BUS1 97 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 Q6ZWC4 215 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 ATP5L2Q7Z4Y8 100 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 AMN1Q8IY45 258 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 CHCHD1Q96BP2 118 aaKnown RBP8.73□□□□□ -1.01
CCDC40-204ENST00000397545 IGHV1-3A0A0C4DH29 117 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 SNRPD3P62318 126 aaKnown RBP8.73□□□□□ -1.01
CCDC40-204ENST00000397545 ZNF672Q499Z4 452 aaPredicted RBP8.73□□□□□ -1.01
CCDC40-204ENST00000397545 SLC25A48Q6ZT89 311 aaKnown RBP8.73□□□□□ -1.01
CCDC40-204ENST00000397545 A0A1B0GWJ7 208 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 IGLV3-1P01715 115 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 CENPVQ7Z7K6 275 aaPredicted RBP8.73□□□□□ -1.01
CCDC40-204ENST00000397545 TMEM219Q86XT9 240 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 SSC4DQ8WTU2 575 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 MRAP2Q96G30 205 aa8.73□□□□□ -1.01
CCDC40-204ENST00000397545 DPM2O94777 84 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 CD7P09564 240 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 CD300EQ496F6 205 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-204ENST00000397545 UNQ6494/PRO21346Q6UXR6 183 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 STPG4Q8N801 248 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 C7orf69Q9H7B7 122 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 HIVEP3Q5T1R4 2406 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 A0A1W2PPI3 338 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 GGTLC3B5MD39 225 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 NPSP0C0P6 89 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 EMP1P54849 157 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 C18orf32Q8TCD1 76 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 DUX5Q96PT3 197 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-204ENST00000397545 MMP23AO75900 390 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 ARMS2P0C7Q2 107 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 C15orf32Q32M92 178 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 TTC32Q5I0X7 151 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 BCL6BQ8N143 479 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-204ENST00000397545 SIGLEC9Q9Y336 463 aa8.72□□□□□ -1.01
CCDC40-204ENST00000397545 IGHV3-64A0A075B6Q5 118 aa8.71□□□□□ -1.01
CCDC40-204ENST00000397545 A0A0U1RRA0 63 aa8.71□□□□□ -1.01
CCDC40-204ENST00000397545 ZNF134P52741 427 aa8.71□□□□□ -1.01
CCDC40-204ENST00000397545 NDPQ00604 133 aa8.71□□□□□ -1.01
CCDC40-204ENST00000397545 SMAGPQ0VAQ4 97 aa8.71□□□□□ -1.01
CCDC40-204ENST00000397545 NXT2Q9NPJ8 142 aaKnown RBP8.71□□□□□ -1.01
CCDC40-204ENST00000397545 NCKAP5O14513 1909 aa8.71□□□□□ -1.01
CCDC40-204ENST00000397545 SETD2Q9BYW2 2564 aaPredicted RBP8.71□□□□□ -1.02
CCDC40-204ENST00000397545 PIMREGQ9BSJ6 248 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 LY96Q9Y6Y9 160 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 F2Z2F3 143 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 VDAC2P45880 294 aaPredicted RBP8.71□□□□□ -1.02
CCDC40-204ENST00000397545 SLAQ13239 276 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 RRN3P1Q2M238 152 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 OR4X2Q8NGF9 303 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 TRGV9Q99603 122 aa8.71□□□□□ -1.02
CCDC40-204ENST00000397545 PPP1R17O96001 155 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 IFI27P40305 119 aaPredicted RBP8.7□□□□□ -1.02
CCDC40-204ENST00000397545 NEU4Q8WWR8 484 aaPredicted RBP8.7□□□□□ -1.02
CCDC40-204ENST00000397545 ZNF479Q96JC4 524 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 LMO1P25800 156 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 KLRB1Q12918 225 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 ZNF329Q86UD4 541 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 TNFRSF18Q9Y5U5 241 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 IGKCP01834 107 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 PPBPP02775 128 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 CNTFRP26992 372 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 ERVK11-1P61568 191 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 UBE2V1Q13404 147 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 CIRBPQ14011 172 aaKnown RBP8.7□□□□□ -1.02
CCDC40-204ENST00000397545 TPTE2P1Q5T6R2 138 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 SAMD5Q5TGI4 173 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 RAX2Q96IS3 184 aa8.7□□□□□ -1.02
CCDC40-204ENST00000397545 NAV2Q8IVL1 2488 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 ZC2HC1BQ5TFG8 222 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 FGF23Q9GZV9 251 aaPredicted RBP8.69□□□□□ -1.02
CCDC40-204ENST00000397545 LRRK2Q5S007 2527 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 A0A0G2JLM5 398 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 A0A0G2JNJ9 132 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 ZNF815PA8K554 130 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 UBE2L6O14933 153 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 SRSF1Q07955 248 aaKnown RBP eCLIP8.69□□□□□ -1.02
CCDC40-204ENST00000397545 Q0VG73 95 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 C20orf144Q9BQM9 153 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 MRPL27Q9P0M9 148 aaKnown RBP8.69□□□□□ -1.02
CCDC40-204ENST00000397545 Q9UFV3 132 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms