RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 FAM223BA6NKX1 122 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 NBEAP1P0C6P0 100 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 AKR1D1P51857 326 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 LYZP61626 148 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 ACTL10Q5JWF8 245 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 LCNL1Q6ZST4 164 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 FAM223AQ8IWN6 122 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF491Q8N8L2 437 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 WIPF2Q8TF74 440 aaPredicted RBP11.52□□□□□ -0.57
CAPN3-207ENST00000397200 OSTCQ9NRP0 149 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 IL36BQ9NZH7 164 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 V9GYV3 84 aa11.52□□□□□ -0.57
CAPN3-207ENST00000397200 NDUFB8O95169 186 aa11.51□□□□□ -0.57
CAPN3-207ENST00000397200 CNN1P51911 297 aaKnown RBP11.51□□□□□ -0.57
CAPN3-207ENST00000397200 MFAP4P55083 255 aa11.51□□□□□ -0.57
CAPN3-207ENST00000397200 RNF152Q8N8N0 203 aa11.51□□□□□ -0.57
CAPN3-207ENST00000397200 USMG5Q96IX5 58 aa11.51□□□□□ -0.57
CAPN3-207ENST00000397200 SHANK2-AS3Q9BTD1 123 aa11.51□□□□□ -0.57
CAPN3-207ENST00000397200 KLF12Q9Y4X4 402 aa11.51□□□□□ -0.57
CAPN3-207ENST00000397200 A0A0G2JLM5 398 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 ISLRO14498 428 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 RPLP1P05386 114 aaKnown RBP11.5□□□□□ -0.57
CAPN3-207ENST00000397200 CDX1P47902 265 aaPredicted RBP11.5□□□□□ -0.57
CAPN3-207ENST00000397200 ATP5G2Q06055 141 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 C15orf32Q32M92 178 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF600Q6ZNG1 722 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 RNF125Q96EQ8 232 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 SMIM12Q96EX1 92 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 TXN2Q99757 166 aa11.5□□□□□ -0.57
CAPN3-207ENST00000397200 HIST1H1EP10412 219 aaKnown RBP11.49□□□□□ -0.57
CAPN3-207ENST00000397200 TMEM183BQ1AE95 376 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 C5orf17Q8NAS9 161 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 VN1R17PQ8TDU5 208 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 TMEM158Q8WZ71 300 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 C21orf62Q9NYP8 219 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 EPDR1Q9UM22 224 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF98A6NK75 572 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 MRPS12O15235 138 aaKnown RBP11.49□□□□□ -0.57
CAPN3-207ENST00000397200 GNG7O60262 68 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 SMIM6P0DI80 62 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 CD28P10747 220 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 NDUFA6P56556 154 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 OR5I1Q13606 314 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 KHDC1LQ5JSQ8 128 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 COA6Q5JTJ3 125 aaKnown RBP11.49□□□□□ -0.57
CAPN3-207ENST00000397200 FAM231DQ6ZW35 169 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 MYOZ3Q8TDC0 251 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 EEF1AKMT3Q96AZ1 226 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 S4R3C0 116 aa11.49□□□□□ -0.57
CAPN3-207ENST00000397200 IFITM10A6NMD0 228 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 S100A9P06702 114 aaKnown RBP11.48□□□□□ -0.57
CAPN3-207ENST00000397200 IGLC2P0DOY2 106 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 MEOX2P50222 304 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 ERVFC1-1P60608 527 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 RANP62826 216 aaKnown RBP11.48□□□□□ -0.57
CAPN3-207ENST00000397200 TCTEX1D4Q5JR98 221 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 LEMD1Q68G75 181 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 C11orf44Q8N8P7 122 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 ATG101Q9BSB4 218 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 OTORQ9NRC9 128 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF586Q9NXT0 402 aa11.48□□□□□ -0.57
CAPN3-207ENST00000397200 ATRQ13535 2644 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 PGPA6NDG6 321 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 IGHV3-23P01764 117 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 BLNKQ8WV28 456 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 WFDC12Q8WWY7 111 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF414Q96IQ9 312 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 UBE2E2Q96LR5 201 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 LINC00479Q96M42 142 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 Q9H3A6 140 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 RNF24Q9Y225 148 aa11.47□□□□□ -0.57
CAPN3-207ENST00000397200 TRBV7-1A0A0A6YYK4 115 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF320A2RRD8 509 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 SLC17A3O00476 420 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 IL4P05112 153 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 SLC25A5P05141 298 aaKnown RBP11.46□□□□□ -0.57
CAPN3-207ENST00000397200 GNG5P63218 68 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 USF2Q15853 346 aaPredicted RBP11.46□□□□□ -0.57
CAPN3-207ENST00000397200 RPEL1Q2QD12 228 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 S100A7AQ86SG5 101 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 BPIFA4PQ86YQ2 179 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 HIST3H2BBQ8N257 126 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 ZNF502Q8TBZ5 544 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 C12orf57Q99622 126 aa11.46□□□□□ -0.57
CAPN3-207ENST00000397200 TRBV6-1A0A0K0K1D8 114 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 SCGB2A1O75556 95 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 TCRAP04437 139 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 KRTAP10-3P60369 221 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 Q56UQ5 140 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 IBA57Q5T440 356 aaKnown RBP11.46□□□□□ -0.58
CAPN3-207ENST00000397200 LYPD1Q8N2G4 141 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 FMC1Q96HJ9 113 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 CITED2Q99967 270 aaPredicted RBP11.46□□□□□ -0.58
CAPN3-207ENST00000397200 MLST8Q9BVC4 326 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 RNASE7Q9H1E1 156 aaKnown RBP11.46□□□□□ -0.58
CAPN3-207ENST00000397200 GNB4Q9HAV0 340 aa11.46□□□□□ -0.58
CAPN3-207ENST00000397200 TSSC4Q9Y5U2 329 aaPredicted RBP11.46□□□□□ -0.58
CAPN3-207ENST00000397200 TRBV19A0A075B6N1 114 aa11.45□□□□□ -0.58
CAPN3-207ENST00000397200 SMIM27A0A1W2PRY6 76 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms