RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 HIGD1AQ9Y241 93 aa10.6□□□□□ -0.71
CHMP3-202ENST00000393773 SRRM2Q9UQ35 2752 aaKnown RBP10.59□□□□□ -0.71
CHMP3-202ENST00000393773 H7BYZ3 331 aa10.59□□□□□ -0.71
CHMP3-202ENST00000393773 WRBO00258 174 aa10.59□□□□□ -0.71
CHMP3-202ENST00000393773 MRPS12O15235 138 aaKnown RBP10.59□□□□□ -0.71
CHMP3-202ENST00000393773 LINC00869P0C866 280 aa10.59□□□□□ -0.71
CHMP3-202ENST00000393773 LINC00315P59091 139 aa10.59□□□□□ -0.71
CHMP3-202ENST00000393773 PLP1P60201 277 aa10.59□□□□□ -0.71
CHMP3-202ENST00000393773 RPP30P78346 268 aaKnown RBP10.59□□□□□ -0.71
CHMP3-202ENST00000393773 DLK1P80370 383 aa10.59□□□□□ -0.71
CHMP3-202ENST00000393773 H3BNG1 76 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 RAP2BP61225 183 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 TMEM128Q5BJH2 165 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 SPANXN5Q5MJ07 72 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 GFI1BQ5VTD9 330 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 TMED4Q7Z7H5 227 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 RPUSD4Q96CM3 377 aaKnown RBP10.58□□□□□ -0.72
CHMP3-202ENST00000393773 C20orf144Q9BQM9 153 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 PARD6GQ9BYG4 376 aaPredicted RBP10.58□□□□□ -0.72
CHMP3-202ENST00000393773 PPP1R14DQ9NXH3 145 aa10.58□□□□□ -0.72
CHMP3-202ENST00000393773 HYPMO75409 117 aa10.57□□□□□ -0.72
CHMP3-202ENST00000393773 ADAP1O75689 374 aa10.57□□□□□ -0.72
CHMP3-202ENST00000393773 IL5P05113 134 aa10.57□□□□□ -0.72
CHMP3-202ENST00000393773 TMPRSS5Q9H3S3 457 aa10.57□□□□□ -0.72
CHMP3-202ENST00000393773 CCDC59Q9P031 241 aaKnown RBP10.57□□□□□ -0.72
CHMP3-202ENST00000393773 GAGE12BA1L429 117 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 SMCO3A2RU48 225 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 PMS2P5A8MQ11 134 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 GAGE7O76087 117 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 OR5G3P0C626 314 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 GAGE12FP0CL80 117 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 GAGE12GP0CL81 117 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 GAGE12IP0CL82 117 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 CXCL2P19875 107 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 VAMP1P23763 118 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 XGP55808 180 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 PATE2Q6UY27 113 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 TRIM63Q969Q1 353 aa10.56□□□□□ -0.72
CHMP3-202ENST00000393773 ZNF331Q9NQX6 463 aaPredicted RBP10.56□□□□□ -0.72
CHMP3-202ENST00000393773 RSL24D1Q9UHA3 163 aaKnown RBP10.56□□□□□ -0.72
CHMP3-202ENST00000393773 STRAPQ9Y3F4 350 aaKnown RBP10.56□□□□□ -0.72
CHMP3-202ENST00000393773 FLG2Q5D862 2391 aaPredicted RBP10.55□□□□□ -0.72
CHMP3-202ENST00000393773 RLN2P04090 185 aa10.55□□□□□ -0.72
CHMP3-202ENST00000393773 INAFM2P0DMQ5 153 aa10.55□□□□□ -0.72
CHMP3-202ENST00000393773 FUSP35637 526 aaKnown RBP eCLIP10.55□□□□□ -0.72
CHMP3-202ENST00000393773 LCN15Q6UWW0 184 aa10.55□□□□□ -0.72
CHMP3-202ENST00000393773 LYPD1Q8N2G4 141 aa10.55□□□□□ -0.72
CHMP3-202ENST00000393773 DYNC2LI1Q8TCX1 351 aa10.55□□□□□ -0.72
CHMP3-202ENST00000393773 SOSTQ9BQB4 213 aa10.55□□□□□ -0.72
CHMP3-202ENST00000393773 A0A096LPF7 62 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 PRAC2D3DTV9 90 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 K7EPK0 472 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 SLC17A3O00476 420 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 CCNKO75909 580 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 SFT2D2O95562 160 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 SELENOTP62341 195 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 PPP1R1AQ13522 171 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 Q5VSD8 79 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 LRRC20Q8TCA0 184 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 VSIG2Q96IQ7 327 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 SLC50A1Q9BRV3 221 aa10.54□□□□□ -0.72
CHMP3-202ENST00000393773 SNURFLB1AK76 121 aa10.53□□□□□ -0.72
CHMP3-202ENST00000393773 HOXB5P09067 269 aa10.53□□□□□ -0.72
CHMP3-202ENST00000393773 CDPF1Q6NVV7 123 aa10.53□□□□□ -0.72
CHMP3-202ENST00000393773 Q6ZTI0 123 aa10.53□□□□□ -0.72
CHMP3-202ENST00000393773 ZBTB8BQ8NAP8 495 aaPredicted RBP10.53□□□□□ -0.72
CHMP3-202ENST00000393773 ARL6Q9H0F7 186 aa10.53□□□□□ -0.72
CHMP3-202ENST00000393773 ARV1Q9H2C2 271 aa10.53□□□□□ -0.72
CHMP3-202ENST00000393773 LINC00854A0A1B0GVQ3 168 aa10.52□□□□□ -0.73
CHMP3-202ENST00000393773 FAUP35544 74 aaKnown RBP10.52□□□□□ -0.73
CHMP3-202ENST00000393773 POLR2GP62487 172 aaKnown RBP eCLIP10.52□□□□□ -0.73
CHMP3-202ENST00000393773 SLC38A11Q08AI6 406 aa10.52□□□□□ -0.73
CHMP3-202ENST00000393773 CCDC28AQ8IWP9 274 aa10.52□□□□□ -0.73
CHMP3-202ENST00000393773 SLIRPQ9GZT3 109 aaKnown RBP10.52□□□□□ -0.73
CHMP3-202ENST00000393773 SNRPCP09234 159 aaKnown RBP10.51□□□□□ -0.73
CHMP3-202ENST00000393773 ERVFC1-1P60608 527 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 RRAS2P62070 204 aaPredicted RBP10.51□□□□□ -0.73
CHMP3-202ENST00000393773 ID3Q02535 119 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 DAZ2Q13117 558 aaKnown RBP10.51□□□□□ -0.73
CHMP3-202ENST00000393773 CCDC190Q86UF4 302 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 C18orf15Q96N68 181 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 ODF3Q96PU9 254 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 PGPEP1Q9NXJ5 209 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 PSENENQ9NZ42 101 aa10.51□□□□□ -0.73
CHMP3-202ENST00000393773 FNDC10F2Z333 226 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 H3BTX0 84 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 SIVA1O15304 175 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 SSSCA1O60232 199 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 DNAH10OSP0CZ25 163 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 IGLC2P0DOY2 106 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 TNFSF8P32971 234 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 MORN5Q5VZ52 161 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 TMEM14EPQ6UXP3 125 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 LINC00305Q7Z4B0 112 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 S100A7AQ86SG5 101 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 C11orf72Q8NBR9 251 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 SLC25A21Q9BQT8 299 aaPredicted RBP10.5□□□□□ -0.73
CHMP3-202ENST00000393773 DNAH8Q96JB1 4490 aa10.5□□□□□ -0.73
CHMP3-202ENST00000393773 TRAV12-3A0A0B4J271 114 aa10.49□□□□□ -0.73
CHMP3-202ENST00000393773 FABP12A6NFH5 140 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms