RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 FXYD1O00168 92 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 VMO1Q7Z5L0 202 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 ORMDL1Q9P0S3 153 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 SPINK13Q1W4C9 94 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 MST1LQ2TV78 715 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 BOD1L2Q8IYS8 172 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 IL17DQ8TAD2 202 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 PILRBQ9UKJ0 227 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 RNASE13Q5GAN3 156 aaKnown RBP3.83□□□□□ -1.8
SCN1A-202ENST00000375405 ARTNQ5T4W7 220 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 LAMB1P07942 1786 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV1D-13A0A0B4J2D9 117 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 A6NED7 52 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV1-13P0DP09 117 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 LY6G5BQ8NDX9 201 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 R3HDMLQ9H3Y0 253 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 TIAM2Q8IVF5 1701 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 B4DSR2 109 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 RSPO2Q6UXX9 243 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-202ENST00000375405 PRSS41Q7RTY9 318 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 C9orf85Q96MD7 179 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 SCN4AP35499 1836 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 PHIPQ8WWQ0 1821 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 KDM3BQ7LBC6 1761 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 NTF4P34130 210 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 TMEM196Q5HYL7 178 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 LHFPL1Q86WI0 220 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 PUSL1Q8N0Z8 303 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 SLC22A18ASQ8N1D0 253 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 RNASE6Q93091 150 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 ALKAL1Q6UXT8 129 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 RETNLBQ9BQ08 111 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 HIGD2AQ9BW72 106 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 TCF19Q9Y242 345 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 CSDC2Q9Y534 153 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 GPR179Q6PRD1 2367 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV6D-21A0A0A0MT36 114 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 LTAP01374 205 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 ZNF493Q6ZR52 646 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 RFLNBQ8N5W9 214 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 LTBP3Q9NS15 1303 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 TRAV13-2A0A0B4J235 113 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 H3BMG7 143 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 ZNF134P52741 427 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 LYPD6Q86Y78 171 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 NPBQ8NG41 125 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 SF3B5Q9BWJ5 86 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV6-21A0A0C4DH24 114 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV1-6A0A0C4DH72 117 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 SCO2A0A1W2PP80 73 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 CELA2AP08217 269 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 GCHFRP30047 84 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 C8orf49Q96NF6 230 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 SRSF8Q9BRL6 282 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 NOP10Q9NPE3 64 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 F8P00451 2351 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 VWA8A3KMH1 1905 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 A0A087X0K7 114 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 PRR31Q5SQ13 230 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 ZCCHC24Q8N2G6 241 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 SYS1Q8N2H4 156 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 ZNF491Q8N8L2 437 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 RNASE7Q9H1E1 156 aaKnown RBP3.82□□□□□ -1.8
SCN1A-202ENST00000375405 NEU3Q9UQ49 428 aa3.82□□□□□ -1.8
SCN1A-202ENST00000375405 LINC01619G3V211 115 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 TAX1BP3O14907 124 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 SH2D1AO60880 128 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 CXCL2P19875 107 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 CD200R1LQ6Q8B3 271 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 Q6ZWC4 215 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 RNF125Q96EQ8 232 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 COL14A1Q05707 1796 aaKnown RBP3.81□□□□□ -1.8
SCN1A-202ENST00000375405 A0A1W2PRS3 328 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 PRSS46E5RG02 174 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 ZNF138P52744 262 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 LSM6P62312 80 aaKnown RBP3.81□□□□□ -1.8
SCN1A-202ENST00000375405 PIFOQ8TCI5 191 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 HIST1H2BLQ99880 126 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 MESP1Q9BRJ9 268 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 LRP6O75581 1613 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV1-27A0A075B6S5 117 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 CXorf51AA0A1B0GTR3 108 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 A0A1B0GUS0 222 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 TEX36Q5VZQ5 186 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 Q6AWC8 147 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 C9orf40Q8IXQ3 194 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 SRP19P09132 144 aaKnown RBP3.81□□□□□ -1.8
SCN1A-202ENST00000375405 CA7P43166 264 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 FOXI1Q12951 378 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 APCDD1LQ8NCL9 501 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV1D-37A0A075B6S9 117 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 IGHV1-18A0A0C4DH31 117 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 A0A1W2PR77 199 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 SPINK1P00995 79 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 FHL1Q13642 323 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 C1orf100Q5SVJ3 147 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 TSKUQ8WUA8 353 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 CNRIP1Q96F85 164 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-202ENST00000375405 C2orf16Q68DN1 1984 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms